Factsheet for PGSC0003DMT400017609

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400033011
PGSC0003DMT400062134
PGSC0003DMT400067201
PGSC0003DMT400073555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	PGSC0003DMT400073555	AT1G24510.1	21798944
AT3G03960.1	PGSC0003DMT400067201	AT3G11830.1	21798944
AT3G03960.1	PGSC0003DMT400033011	AT5G16070.1	21798944
AT3G03960.1	PGSC0003DMT400062134	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088080.2.1	Tomato	nucleus	98.52	98.52
VIT_08s0007g07460.t01	Wine grape	cytosol	87.8	87.16
GSMUA_Achr3P25570_001	Banana	cytosol	87.25	86.76
KRH70153	Soybean	nucleus	87.25	86.61
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	87.25	86.61
GSMUA_Achr8P04580_001	Banana	cytosol	86.69	86.21
EES09994	Sorghum	cytosol	86.88	85.77
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	86.69	85.58
TraesCS4B01G165400.1	Wheat	cytosol	85.21	85.37
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	85.95	85.16
TraesCS4A01G164900.2	Wheat	cytosol	85.21	84.74
TraesCS4D01G157300.1	Wheat	cytosol	83.92	84.54
HORVU4Hr1G040660.1	Barley	cytosol	84.29	84.44
CDY29973	Canola	cytosol	82.44	81.99
Bra036422.1-P	Field mustard	cytosol	82.44	81.99
CDY21153	Canola	cytosol	81.89	81.43
Zm00001d007508_P005	Maize	cytosol	85.95	81.15
Bra001094.1-P	Field mustard	cytosol	81.89	80.84
CDX74202	Canola	cytosol, plasma membrane	81.89	80.84
CDX92056	Canola	cytosol	81.89	80.84
AT3G03960.1	Thale cress	cytosol	81.15	79.96
Bra031959.1-P	Field mustard	cytosol	80.22	79.78
CDY50868	Canola	cytosol	79.85	79.41
CDY42892	Canola	cytosol	79.85	79.41
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	77.82	79.28
TraesCS6D01G008000.1	Wheat	cytosol	79.85	75.79
CDY50320	Canola	cytosol	36.97	75.76
CDX79329	Canola	cytosol	36.04	73.86
PGSC0003DMT400066954	Potato	cytosol	28.28	28.07
PGSC0003DMT400014441	Potato	plastid	26.8	26.9
PGSC0003DMT400060294	Potato	cytosol	26.62	25.95
PGSC0003DMT400019727	Potato	cytosol	6.47	25.18
PGSC0003DMT400067201	Potato	cytosol	25.69	24.91
PGSC0003DMT400033011	Potato	cytosol	24.21	24.49
PGSC0003DMT400050534	Potato	cytosol	14.23	24.37
PGSC0003DMT400062134	Potato	cytosol	23.66	23.93
PGSC0003DMT400027968	Potato	cytosol	9.61	23.74
PGSC0003DMT400033155	Potato	cytosol	15.16	23.23
PGSC0003DMT400073555	Potato	cytosol	9.43	19.54

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102597293	MapMan:20.3.1.8	Gene3D:3.50.7.10	InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987
GO:GO:0016020	GO:GO:0044183	GO:GO:0051050	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1A967	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400006829
PGSC:PGSC0003DMG400006829	EnsemblPlants:PGSC0003DMT400017609	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353
PANTHER:PTHR11353:SF78	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346
UniParc:UPI000294D8C5	RefSeq:XP_006345388.1	:	:	:	:

Description

TCP domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006829]

Coordinates

chr1:-:64713549..64722788

Molecular Weight (calculated)

58368.5 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.040

Length

541 amino acids

Sequence
(BLAST)

001: MQPYGIQSML KEGHKHLSGL DEAVLKNIDA CKQLSAITRT SLGPNGMNKM VINHLDKLFV TNDAATIVNE LEVQHPAAKI LVLAGKAQQE EIGDGANLTV
101: SFAGELLQNA EELIRMGLHP SEIIIGYNKA INKTIELLDE LVEEGSENMN VKDKNEVISR MKSAVASKQF GLEDVLCPLV AEACIQVCPK NPANFNVDNV
201: RVAKLLGGGL LNSTIVRGMV LKSDAVGSIK RIEKAKVAVF VQGVDTSATE TKGTVLIHSA EQLENYAKTE EAKVEELIKS VADSGAKVIV SGAAVGEMAL
301: HFCERYKLMV LKISSKFELR RFCRTTGAVA LLKLSQPNPD DLGHVDSVSV EEIGGVRVTV VRNEDGGNSV STVVLRGSTD SILDDLERAI DDGVNTYKAM
401: CRDSRIVPGA AATEIELARK LKEFSFKEMG LDQYAIAKFA ESFEMVPKTL AENAGLNAME IISTLYAEHA SGNVKVGLNL EKGACEDISG LSIWDLYVTK
501: FFALKYAADA VCTVLRVDQI IMSKPAGGPG KREQPAGMDE D

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.