Factsheet for PGSC0003DMT400050534

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71043	Canola	cytosol	87.66	87.94
PGSC0003DMT400033155	Potato	cytosol	81.01	72.52
Solyc11g069000.1.1	Tomato	extracellular	98.42	59.13
Bra020134.1-P	Field mustard	cytosol	87.97	54.83
VIT_18s0001g00480.t01	Wine grape	cytosol	90.82	54.25
KRH25193	Soybean	nucleus	89.56	53.7
KRH30467	Soybean	nucleus	89.56	53.7
GSMUA_Achr2P01800_001	Banana	cytosol	89.24	53.51
CDY16573	Canola	cytosol	87.97	52.75
Bra002337.1-P	Field mustard	cytosol	87.97	52.75
CDX70950	Canola	cytosol	87.97	52.75
CDY09085	Canola	cytosol	87.97	52.75
CDX92428	Canola	cytosol	87.97	52.75
AT5G20890.1	Thale cress	cytosol	87.03	52.18
GSMUA_Achr3P24440_001	Banana	peroxisome	81.65	46.91
Bra006584.1-P	Field mustard	cytosol	87.66	37.03
CDX88835	Canola	mitochondrion	87.97	36.58
PGSC0003DMT400073555	Potato	cytosol	18.35	22.22
PGSC0003DMT400066954	Potato	cytosol	30.38	17.61
PGSC0003DMT400014441	Potato	plastid	29.11	17.07
PGSC0003DMT400062134	Potato	cytosol	28.8	17.01
PGSC0003DMT400067201	Potato	cytosol	29.43	16.67
PGSC0003DMT400033011	Potato	cytosol	28.16	16.64
PGSC0003DMT400017609	Potato	cytosol	24.37	14.23
PGSC0003DMT400060294	Potato	cytosol	23.73	13.51
PGSC0003DMT400027968	Potato	cytosol	5.38	7.76
PGSC0003DMT400019727	Potato	cytosol	2.22	5.04
CDY72126	Canola	cytosol	0.63	0.94
CDY72106	Canola	cytosol	0.63	0.94

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.50.7.10	InterPro:Chap_CCT_beta	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027413
UniProt:M1BQG8	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400019637	PGSC:PGSC0003DMG400019637	EnsemblPlants:PGSC0003DMT400050534	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	TIGRFAMs:TIGR02341	UniParc:UPI000295F591	:

Description

Chaperonin containing t-complex protein 1, beta subunit, tcpb [Source:PGSC_GENE;Acc:PGSC0003DMG400019637]

Coordinates

chr11:-:40853135..40859951

Molecular Weight (calculated)

34198.5 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.026

Length

316 amino acids

Sequence
(BLAST)

001: MKGLFGQKIG VGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMAKVA DLEAAEKEKM REKVQKIISH GINCFVNRQL IYNFPEELFA DAGILAIEHA
101: DFDGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGV AMGQACTIVL RGASPHVLDE AERSLHDALC VLSQTVNDSR VLLGGGWPEM
201: VMAKAVDELA KKTPGKRSHA IEAFTRALLA IPTTIADNAG LDSAELIAQL RAEHHKDESN AGIDVISGSV GDMSELGISE SFKVKQAVLL SATEAAEMIL
301: RVDEIITCAP RRREGM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.