Factsheet for Bra006584.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002337.1-P	Field mustard	cytosol	69.65	98.86
Bra020134.1-P	Field mustard	cytosol	66.44	98.03
AT5G20890.1	Thale cress	cytosol	67.51	95.83
CDX88835	Canola	mitochondrion	94.39	92.89
VIT_18s0001g00480.t01	Wine grape	cytosol	63.9	90.36
KRH25193	Soybean	nucleus	62.7	88.99
KRH30467	Soybean	nucleus	62.43	88.61
GSMUA_Achr2P01800_001	Banana	cytosol	62.3	88.42
Solyc11g069000.1.1	Tomato	extracellular	62.17	88.4
Os03t0619400-01	Rice	plasma membrane	61.63	87.81
PGSC0003DMT400050534	Potato	cytosol	37.03	87.66
TraesCS4B01G250200.1	Wheat	cytosol	58.56	87.6
TraesCS4D01G250100.1	Wheat	cytosol	58.56	87.6
Os05t0556700-01	Rice	cytosol, plasma membrane	38.37	87.5
EES00491	Sorghum	cytosol	61.23	87.24
EES00273	Sorghum	cytosol	59.36	87.06
TraesCS4A01G054800.1	Wheat	cytosol, unclear	61.1	87.05
Zm00001d040257_P001	Maize	cytosol	60.96	86.86
PGSC0003DMT400033155	Potato	cytosol	40.91	86.69
TraesCS5A01G342600.1	Wheat	cytosol	60.96	86.36
TraesCS5D01G347400.1	Wheat	cytosol	60.96	86.36
TraesCS5B01G341900.1	Wheat	cytosol	60.83	85.69
Zm00001d008369_P001	Maize	cytosol, nucleus	60.03	85.52
HORVU5Hr1G085530.1	Barley	mitochondrion	61.63	83.97
HORVU4Hr1G068820.1	Barley	cytosol	61.76	82.5
GSMUA_Achr3P24440_001	Banana	peroxisome	58.96	80.18
TraesCS3B01G595300.1	Wheat	cytosol	13.24	73.33
Zm00001d040688_P001	Maize	cytosol	27.54	73.31
Zm00001d052882_P001	Maize	plastid	27.14	40.04
Bra038682.1-P	Field mustard	cytosol	25.27	34.05
Bra001423.1-P	Field mustard	cytosol	25.27	33.75
Bra034807.1-P	Field mustard	cytosol	23.8	33.52
Bra001773.1-P	Field mustard	cytosol	24.47	33.52
Bra021300.1-P	Field mustard	cytosol	23.53	33.15
Bra035820.1-P	Field mustard	cytosol	24.33	32.73
Bra022292.1-P	Field mustard	cytosol, plastid	23.13	32.46
Bra032797.1-P	Field mustard	cytosol	22.46	31.4
Bra012506.1-P	Field mustard	cytosol	22.46	31.4
Bra010965.1-P	Field mustard	cytosol	22.19	31.03
Bra001174.1-P	Field mustard	cytosol	20.45	27.57
Bra040242.1-P	Field mustard	cytosol	20.32	27.39
Bra040591.1-P	Field mustard	cytosol	18.85	26.36
Bra008652.1-P	Field mustard	cytosol	18.85	26.31
Bra006338.1-P	Field mustard	cytosol	15.64	25.77
Bra031959.1-P	Field mustard	cytosol	18.18	25.0
Bra036422.1-P	Field mustard	cytosol	17.91	24.63
Bra001094.1-P	Field mustard	cytosol	17.91	24.45
Bra038252.1-P	Field mustard	cytosol	24.6	24.18
Bra035423.1-P	Field mustard	cytosol	7.09	23.66

Protein Annotations

Gene3D:1.10.560.10	MapMan:1.2.1.2.2	MapMan:19.1.7.2	Gene3D:2.30.33.40	MapMan:20.3.1.2	Gene3D:3.30.260.10
Gene3D:3.50.7.10	EnsemblPlantsGene:Bra006584	EnsemblPlants:Bra006584.1	EnsemblPlants:Bra006584.1-P	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_GroES	InterPro:Chaperonin_GroES_sf	InterPro:Chaperonin_TCP-1_CS	InterPro:Chaprnonin_Cpn10_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:GroES-like_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
InterPro:IPR037124	UniProt:M4CQU3	PFAM:PF00118	PFAM:PF00166	PRINTS:PR00304	ScanProsite:PS00681
ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF23	SMART:SM00883
SUPFAM:SSF48592	SUPFAM:SSF50129	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341
UniParc:UPI000254005A	:	:	:	:	:

Description

AT5G20890 (E=2e-288) | chaperonin, putative

Coordinates

chrA03:-:4154113..4161160

Molecular Weight (calculated)

81580.4 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.171

Length

748 amino acids

Sequence
(BLAST)

001: MAATQLTSSP VTVSARSFSE LRYASIKPLG DLVLVKIKEA EEKTYYGRLE HAGTEVEFNG EKHLILKEDD IVGLLETEDI KDLKPLNDRV FIKVAEAEEK
101: TAGGLLLTET TKEKPSIGTV IAVGPGTLDE EGKVQPLSIS IGSTVLILED GGPPRAPPAS KEVVEKLPVI VFSEEMLKTL GADVECCIRK ENLDEHNSCP
201: ICRHALPTDD QKYESWKERE KEAIDKIFKD DASEEKGERA RMASFIGAMA VADLVKSTLG PKGMDKILQS TGRGHSVTVT NDGATILKSL HIDNPAAKVL
301: VDISKVQDDE VGDGTTSVVV LAGELLREAE KLVTSKIHPM TIIAGYRMAA ECARDALLKR VIDNKENAEK FRSDLMKIAM TTLCSKILSQ DKEHFAEMAV
401: DAVFRLKGST NLEAIQIIKK PGGSLRDSFL DEGFILDKKI GIGQPKRIEN AKILVANTAM DTDKVKIYGA RVRVDSMTKV AQIEGAEKEK MKDKVNKILA
501: HGINCFVNRQ LIYNFPEELF ADAGVLAIEH ADFEGIERLG LVTGGEIAST FDNPESVKLG HCKLIEEIMI GEDKLIHFSG VEMGQACSIV LRGASHHVLD
601: EAERSLHDAL CVLSQTVNDS RVLLGGGWPE MVMAKEVDEL ARKTAGKKSH AIEAFSRALV AIPTKIADNA GLDSAELVAQ LRAEHHTEGC NAGIDVISGA
701: VGDMEERGIY EAFKVKQAVL LSATEAAEMI LRVDEIITCA PRRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.