Factsheet for Bra031959.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001423.1-P
Bra006338.1-P
Bra008652.1-P
Bra010965.1-P
Bra012506.1-P
Bra032797.1-P
Bra034807.1-P
Bra038682.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03960.1	Bra010965.1-P	AT1G24510.1	21798944
AT3G03960.1	Bra012506.1-P	AT1G24510.1	21798944
AT3G03960.1	Bra032797.1-P	AT1G24510.1	21798944
AT3G03960.1	Bra001423.1-P	AT3G11830.1	21798944
AT3G03960.1	Bra034807.1-P	AT3G11830.1	21798944
AT3G03960.1	Bra038682.1-P	AT3G11830.1	21798944
AT3G03960.1	Bra006338.1-P	AT5G16070.1	21798944
AT3G03960.1	Bra008652.1-P	AT5G16070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50868	Canola	cytosol	99.08	99.08
CDY42892	Canola	cytosol	99.08	99.08
Bra036422.1-P	Field mustard	cytosol	96.14	96.14
Bra001094.1-P	Field mustard	cytosol	96.14	95.44
AT3G03960.1	Thale cress	cytosol	94.12	93.26
Bra035423.1-P	Field mustard	cytosol	36.21	87.95
VIT_08s0007g07460.t01	Wine grape	cytosol	82.17	82.02
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	81.43	81.28
KRH70153	Soybean	nucleus	81.25	81.1
Solyc01g088080.2.1	Tomato	nucleus	80.51	80.96
GSMUA_Achr8P04580_001	Banana	cytosol	80.51	80.51
GSMUA_Achr3P25570_001	Banana	cytosol	80.51	80.51
Os03t0804800-01	Rice	cytosol, extracellular, plasma membrane, plastid	80.7	80.4
PGSC0003DMT400017609	Potato	cytosol	79.78	80.22
EES09994	Sorghum	cytosol	80.51	79.93
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	80.33	79.74
TraesCS4B01G165400.1	Wheat	cytosol	77.39	77.96
HORVU4Hr1G040660.1	Barley	cytosol	77.21	77.78
TraesCS4D01G157300.1	Wheat	cytosol	76.29	77.28
TraesCS4A01G164900.2	Wheat	cytosol	77.21	77.21
Zm00001d007508_P005	Maize	cytosol	79.78	75.74
TraesCS6B01G010900.1	Wheat	mitochondrion, plastid	70.96	72.69
TraesCS6D01G008000.1	Wheat	cytosol	73.53	70.18
Bra001773.1-P	Field mustard	cytosol	27.57	27.47
Bra035820.1-P	Field mustard	cytosol	27.39	26.8
Bra020134.1-P	Field mustard	cytosol	24.63	26.43
Bra002337.1-P	Field mustard	cytosol	25.37	26.19
Bra034807.1-P	Field mustard	cytosol	25.37	25.99
Bra001174.1-P	Field mustard	cytosol	26.47	25.95
Bra001423.1-P	Field mustard	cytosol	26.65	25.89
Bra040242.1-P	Field mustard	cytosol	26.29	25.77
Bra038682.1-P	Field mustard	cytosol	26.1	25.59
Bra022292.1-P	Field mustard	cytosol, plastid	24.26	24.77
Bra021300.1-P	Field mustard	cytosol	24.08	24.67
Bra012506.1-P	Field mustard	cytosol	22.79	23.18
Bra010965.1-P	Field mustard	cytosol	22.61	22.99
Bra040591.1-P	Field mustard	cytosol	22.61	22.99
Bra032797.1-P	Field mustard	cytosol	22.43	22.8
Bra008652.1-P	Field mustard	cytosol	22.06	22.39
Bra006338.1-P	Field mustard	cytosol	17.83	21.37
Bra038252.1-P	Field mustard	cytosol	27.39	19.58
Bra006584.1-P	Field mustard	cytosol	25.0	18.18

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.8	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra031959	EnsemblPlants:Bra031959.1	EnsemblPlants:Bra031959.1-P
InterPro:Chap_CCT_theta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4ET29
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	PANTHER:PTHR11353	PANTHER:PTHR11353:SF78	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02346	UniParc:UPI000254651E	SEG:seg

Description

AT3G03960 (E=6e-283) | chaperonin, putative

Coordinates

chrA02:+:26915049..26918402

Molecular Weight (calculated)

58218.9 Da

IEP (calculated)

5.208

GRAVY (calculated)

-0.040

Length

544 amino acids

Sequence
(BLAST)

001: MQPYGIQSML KEGYRHLSGL DEAVIKNIEA CKELSTITRT SLGPNGMNKM VINHLDKLFV TNDAGTIVNE LEIQHPAAKI LVLAAKAQQE EIGDGANLTI
101: SFAGELLQNA GELIRAGLHP SDIITGYNKA ITKAVEILEQ LVESGSETMD VRSKDEVVFR MRAAVASKQF GQEEIICSLV ADACIQVCPK NPTNFNVDNV
201: RVAKLLGGGL HNSCIVRGMV LKSDAVGSIK RMEKAKVAVF AGGVDTTATE TKGTVLIHSA EQLENYAKTE EAKVEELIKA VAESGAKVIV SGGSVGEMAL
301: HFCERYKIMV LKISSKFELR RFCRTAGAVA HLKLSRPSPD DLGYVDSIAV EEIGGVTVTI ARNEQGGNSI STVVLRGSTD SILDDLERAV DDGVNTYKAM
401: CRDSRIVPGA AATEIELAQR LKEYANAETG LHSHAILKYA ESFQFVPQTL ADNAGLDAME IIASLYTGHG SGNTKLGIDL EEGACKDVSE TKVWDLFATK
501: LFALKYASDA ACTVLRVDQI IMAKQAGGPR RDLAAAAGAG ADED

Best Arabidopsis Sequence Match ( AT3G03960.1 )
(BLAST)

001: MVGMSMQPYG IQSMLKEGYR HLSGLDEAVI KNIEACKELS TITRTSLGPN GMNKMVINHL DKLFVTNDAA TIVNELEIQH PAAKLLVLAA KAQQEEIGDG
101: ANLTISFAGE LLQNAEELIR MGLHPSEIIS GYTKAVSKAV EILEQLVETG SETMDVRNKD EVISRMRAAV ASKQFGQEEI ICSLVTDACI QVCPKNPTNF
201: NVDNVRVSKL LGGGLHNSCI VRGMVLKSDA VGSIKRMEKA KVAVFAGGVD TTATETKGTV LIHSAEQLEN YAKTEEAKVE ELIKAVAESG AKVIVSGGSI
301: GEMALHFCER YKIMVLKISS KFELRRFCRT AGAVAHLKLS RPSPEDLGYV DSISVEEIGG VTVTIARNEE GGNSISTVVL RGSTDSILDD LERAVDDGVN
401: TYKAMCRDSR IVPGAAATEI ELAQRLKEYA NAEIGLDKYA ITKYAESFEF VPKTLADNAG LNAMEIIAAL YTGHGSGNTK LGIDLEEGAC KDVSETKVWD
501: LFATKLFALK YASDAACTVL RVDQIIMAKP AGGPRRDAAQ AAGAGAEED

Arabidopsis Description

CCT8T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.