Factsheet for Bra022292.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
plastid 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002337.1-P
Bra006584.1-P
Bra020134.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Bra002337.1-P	AT5G20890.1	21798944
AT3G18190.1	Bra006584.1-P	AT5G20890.1	21798944
AT3G18190.1	Bra020134.1-P	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92212	Canola	cytosol, plastid	99.25	99.25
CDY24438	Canola	cytosol, plastid	98.87	98.87
Bra021300.1-P	Field mustard	cytosol	97.75	98.12
AT3G18190.1	Thale cress	cytosol, plastid	94.18	93.66
KRH60476	Soybean	endoplasmic reticulum	88.74	88.74
KRH41771	Soybean	endoplasmic reticulum, nucleus	88.56	88.56
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	88.37	88.37
PGSC0003DMT400014441	Potato	plastid	87.99	87.01
Solyc03g118910.1.1	Tomato	plastid	87.8	86.83
KRH49364	Soybean	endoplasmic reticulum, nucleus	82.18	85.71
GSMUA_Achr3P20910_001	Banana	cytosol	54.6	84.1
HORVU7Hr1G034140.1	Barley	plasma membrane	78.42	78.28
Os02t0332200-01	Rice	plasma membrane	78.42	78.28
EER95631	Sorghum	cytosol	78.42	78.13
Zm00001d027371_P001	Maize	plasma membrane	78.42	78.13
TraesCS7A01G426400.1	Wheat	unclear	77.86	77.72
TraesCS7B01G068100.1	Wheat	golgi, unclear	77.86	77.72
TraesCS7D01G164400.1	Wheat	cytosol	77.86	77.72
Zm00001d051742_P001	Maize	plastid	77.49	77.2
GSMUA_Achr6P09540_001	Banana	cytosol	51.41	74.66
Os10t0514600-01	Rice	plasma membrane	75.61	74.49
TraesCS6B01G391500.1	Wheat	mitochondrion	71.67	73.18
Bra032797.1-P	Field mustard	cytosol	36.21	36.07
Bra012506.1-P	Field mustard	cytosol	36.21	36.07
Bra010965.1-P	Field mustard	cytosol	36.02	35.89
Bra020134.1-P	Field mustard	cytosol	31.71	33.33
Bra002337.1-P	Field mustard	cytosol	32.65	33.02
Bra001773.1-P	Field mustard	cytosol	33.58	32.78
Bra035820.1-P	Field mustard	cytosol	33.21	31.83
Bra034807.1-P	Field mustard	cytosol	30.77	30.89
Bra038682.1-P	Field mustard	cytosol	31.52	30.27
Bra001423.1-P	Field mustard	cytosol	31.33	29.82
Bra040242.1-P	Field mustard	cytosol	30.02	28.83
Bra001174.1-P	Field mustard	cytosol	30.02	28.83
Bra036422.1-P	Field mustard	cytosol	25.7	25.18
Bra040591.1-P	Field mustard	cytosol	24.95	24.86
Bra008652.1-P	Field mustard	cytosol	24.95	24.81
Bra001094.1-P	Field mustard	cytosol	25.33	24.64
Bra031959.1-P	Field mustard	cytosol	24.77	24.26
Bra035423.1-P	Field mustard	cytosol	9.94	23.66
Bra006338.1-P	Field mustard	cytosol	20.07	23.57
Bra038252.1-P	Field mustard	cytosol	33.21	23.26
Bra006584.1-P	Field mustard	cytosol	32.46	23.13

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra022292	EnsemblPlants:Bra022292.1	EnsemblPlants:Bra022292.1-P
InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4E0J5	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI0002547366	SEG:seg	:

Description

AT3G18190 (E=4e-274) | chaperonin, putative

Coordinates

chrA05:-:18575136..18576737

Molecular Weight (calculated)

57288.0 Da

IEP (calculated)

7.774

GRAVY (calculated)

0.091

Length

533 amino acids

Sequence
(BLAST)

001: MAAVTASRPR ASKAESFVDN KRKEDIRSAN INAGRAAADA VRPSLGPKGM DKMISTASGE VIITNDGATI LNKMDVLQPA AKMMVELSKS QDSAAGDGTT
101: TVVVLAGALL RVCQTLLGSG IHPTVISDAL HKSCAKSVDI LTAMAVPVEL TDRDSLVKSA STSLNSKVVS QYSTLLAPLA VDAVLSVIDP EKPEIVDLRD
201: IKIVKKLGGT VDDTHTVNGL VFGKKVSHAA GGPTRMENAK IAVIQFQISP PKTDIEQSIV VSDYTQMDRI LKEERNYILG MIKKIKGTGC NVLLIQKSIL
301: RDAVTDLSLH YLAKAKIMVI KDVERDEIEF VTKTLNCLPI ANIEHFRAEK LGYADLVEEA SLGDGKILKI TGIKDMGRTT SVLVRGSNQL VLDEAERSLH
401: DALCVVRCLV SKRFLIAGGG APEIELSRQL GAWAKVLHGM EGYCVKSFAE ALEVIPYTLA ENAGLNPIAI VTELRNKHAQ GEINSGINVR KGQITNILEE
501: NVVQPLLVST SAITLATECV RMILKIDDIV TVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.