Factsheet for GSMUA_Achr3P20910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P01800_001
GSMUA_Achr3P24440_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	GSMUA_Achr2P01800_001	AT5G20890.1	21798944
AT3G18190.1	GSMUA_Achr3P24440_001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	89.6	58.16
KRH60476	Soybean	endoplasmic reticulum	85.55	55.53
CDY24438	Canola	cytosol, plastid	85.26	55.35
AT3G18190.1	Thale cress	cytosol, plastid	85.55	55.22
CDX92212	Canola	cytosol, plastid	84.68	54.97
KRH41771	Soybean	endoplasmic reticulum, nucleus	84.68	54.97
Bra021300.1-P	Field mustard	cytosol	84.1	54.8
CDY18509	Canola	cytosol	84.1	54.8
Bra022292.1-P	Field mustard	cytosol, plastid	84.1	54.6
PGSC0003DMT400014441	Potato	plastid	84.97	54.55
CDX95541	Canola	cytosol, plastid	84.1	54.49
Solyc03g118910.1.1	Tomato	plastid	84.1	53.99
KRH49364	Soybean	endoplasmic reticulum, nucleus	76.3	51.66
GSMUA_Achr6P09540_001	Banana	cytosol	47.69	44.96
GSMUA_Achr9P07660_001	Banana	cytosol	1.45	31.25
GSMUA_AchrUn_...	Banana	cytosol	41.91	27.1
GSMUA_Achr6P06770_001	Banana	cytosol	35.55	25.47
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	19.94	25.18
GSMUA_Achr2P01800_001	Banana	cytosol	36.99	24.29
GSMUA_Achr3P24440_001	Banana	peroxisome	36.71	23.09
GSMUA_Achr11P...	Banana	cytosol	35.55	22.28
GSMUA_Achr2P21510_001	Banana	cytosol	30.92	20.86
GSMUA_Achr8P16590_001	Banana	plastid	36.42	20.79
GSMUA_Achr5P09040_001	Banana	cytosol	32.08	19.93
GSMUA_Achr6P23290_001	Banana	cytosol	31.79	19.75
GSMUA_Achr3P25570_001	Banana	cytosol	28.03	17.83
GSMUA_Achr8P04580_001	Banana	cytosol	28.03	17.83
GSMUA_Achr4P16540_001	Banana	cytosol	27.46	17.76
GSMUA_Achr2P01090_001	Banana	cytosol	18.5	17.73
GSMUA_Achr1P14710_001	Banana	cytosol	27.17	17.57

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr3G20910_001	EnsemblPlants:GSMUA_Achr3P20910_001
EnsemblPlants:GSMUA_Achr3T20910_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0SGF7
PFAM:PF00118	ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0002951A19	SEG:seg	:	:

Description

Putative T-complex protein 1 subunit delta [Source:GMGC_GENE;Acc:GSMUA_Achr3G20910_001]

Coordinates

chr3:-:21961873..21965083

Molecular Weight (calculated)

36862.6 Da

IEP (calculated)

6.167

GRAVY (calculated)

0.079

Length

346 amino acids

Sequence
(BLAST)

001: MAAVAAAAAA PRGSSSKTES YVDTKRRDDV RQANILAARA VADAVRTSLG PKGMDKMIAS ANGEMLVDLS RSQDAAAGDG TTTSAATSLN SKVVSQYSSL
101: LAPLAVDAVL FVVDPAHPDL VDLRDVKIVS HSAGGPTRVE NAKIAERNYI LGMAKILVIK DEKLGFANCV EEVSVGDGKI VKITGIKDMG RTTTVLVRGS
201: NQLVLDEAER SLHDALCVVR CLVNKRFLIA GGGAPEIEMS RQLGAWAKEL QGMESYCIKE FAEALEVIPY TLAENAGLNP IAIVTELRNR HAQGEINTGI
301: NVRKGQITNI LEENVVQPLL VSTSAITLAT ECVRMILKID DIITVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.