Factsheet for Solyc03g118910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
plastid 5

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g069000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Solyc11g069000.1.1	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014441	Potato	plastid	98.7	98.7
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	89.61	90.62
AT3G18190.1	Thale cress	cytosol, plastid	88.87	89.37
Bra021300.1-P	Field mustard	cytosol	87.76	89.08
CDY18509	Canola	cytosol	87.57	88.89
CDY24438	Canola	cytosol, plastid	87.76	88.74
CDX95541	Canola	cytosol, plastid	87.76	88.58
CDX92212	Canola	cytosol, plastid	87.57	88.56
KRH60476	Soybean	endoplasmic reticulum	87.57	88.56
KRH41771	Soybean	endoplasmic reticulum, nucleus	87.38	88.37
Bra022292.1-P	Field mustard	cytosol, plastid	86.83	87.8
KRH49364	Soybean	endoplasmic reticulum, nucleus	80.52	84.93
GSMUA_Achr3P20910_001	Banana	cytosol	53.99	84.1
Os02t0332200-01	Rice	plasma membrane	79.04	79.78
EER95631	Sorghum	cytosol	79.04	79.63
HORVU7Hr1G034140.1	Barley	plasma membrane	78.85	79.59
TraesCS7B01G068100.1	Wheat	golgi, unclear	78.85	79.59
TraesCS7D01G164400.1	Wheat	cytosol	78.48	79.21
TraesCS7A01G426400.1	Wheat	unclear	78.48	79.21
Zm00001d027371_P001	Maize	plasma membrane	78.48	79.07
Zm00001d051742_P001	Maize	plastid	78.11	78.69
Os10t0514600-01	Rice	plasma membrane	75.88	75.6
TraesCS6B01G391500.1	Wheat	mitochondrion	72.54	74.9
GSMUA_Achr6P09540_001	Banana	cytosol	50.83	74.66
Solyc05g013990.2.1	Tomato	nucleus	35.99	36.26
Solyc11g069000.1.1	Tomato	extracellular	33.21	34.03
Solyc01g090750.2.1	Tomato	nucleus	32.65	32.29
Solyc06g065520.2.1	Tomato	nucleus, plastid	31.73	30.65
Solyc05g056310.2.1	Tomato	extracellular, plastid	29.68	28.73
Solyc01g088080.2.1	Tomato	nucleus	27.46	27.36
Solyc02g063090.2.1	Tomato	nucleus, unclear	25.05	25.23
Solyc02g085790.2.1	Tomato	extracellular	24.68	24.86

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.4	Gene3D:3.50.7.10	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0046686
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:K4BM40	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF26	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc03g118910.1
EnsemblPlants:Solyc03g118910.1.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI00027661AF	SEG:seg	:

Description

T-complex protein 1 subunit delta [Source:Projected from Arabidopsis thaliana (AT3G18190) UniProtKB/Swiss-Prot;Acc:Q9LV21]

Coordinates

chr3:-:67683955..67685574

Molecular Weight (calculated)

58040.9 Da

IEP (calculated)

7.195

GRAVY (calculated)

0.129

Length

539 amino acids

Sequence
(BLAST)

001: MASPAVVSAP RSAASSSKTE TFVDNKRKDD IRMANIAAAQ AVANAVRTSL GPKGMDKMIS TANGEVIITN DGATILNKME VLQPAAKFLV ELSKSQDVVA
101: GDGTTTVVVI AGALLKQCLS LLSSGIHPTV VSDSLHKAST KAVEVLTAMA LPVELTDRDS LVKSASTALN SKVVSQYSTL LAPLAVDSVL SVVDPEKPEI
201: VDLRDIRIVK KLGGTVDDTE LVKGLVFDKK VSHASGGLTR VEKAKIGVIQ FQISPPKTDI EQSIVVSDYT QMDRILKEER NYILGMIKKI KATGCNVLLI
301: QKSILRDAVT ELSLHYLSKA KIMVIKDVER DEIEFITKTL NCLPIANIDH FRAEKLGHAD LVEEISLGDG GKIVKITGIQ DMGRTTSVLV RGSNQLVLDE
401: AERSLHDALC VVRCLVNKRF LIAGGGAPEI ELSRQLGAWA KVLQGMEGYC VRSFAEALEV VPYTLAENAG LNPIAIVTEL RNRHAQGEIN TGINVRKGQI
501: TNILEENVVQ PLLVSTSAIT LATECVRMIL KIDDIVTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.