Factsheet for Zm00001d027371_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
plasma membrane: 23508561
nucleus: 24677780
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008369_P001
Zm00001d040257_P001
Zm00001d040688_P001
Zm00001d052882_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18190.1	Zm00001d008369_P001	AT5G20890.1	21798944
AT3G18190.1	Zm00001d040257_P001	AT5G20890.1	21798944
AT3G18190.1	Zm00001d040688_P001	AT5G20890.1	21798944
AT3G18190.1	Zm00001d052882_P001	AT5G20890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95631	Sorghum	cytosol	97.57	97.57
Zm00001d051742_P001	Maize	plastid	97.2	97.2
Os02t0332200-01	Rice	plasma membrane	94.21	94.38
HORVU7Hr1G034140.1	Barley	plasma membrane	91.96	92.13
TraesCS7D01G164400.1	Wheat	cytosol	91.22	91.39
TraesCS7B01G068100.1	Wheat	golgi, unclear	91.22	91.39
TraesCS7A01G426400.1	Wheat	unclear	91.22	91.39
Os10t0514600-01	Rice	plasma membrane	87.85	86.88
TraesCS6B01G391500.1	Wheat	mitochondrion	81.87	83.91
VIT_17s0000g03040.t01	Wine grape	cytosol, plastid	80.75	81.05
KRH60476	Soybean	endoplasmic reticulum	80.0	80.3
KRH41771	Soybean	endoplasmic reticulum, nucleus	79.63	79.92
Bra021300.1-P	Field mustard	cytosol	78.69	79.28
CDY24438	Canola	cytosol, plastid	78.88	79.17
CDX92212	Canola	cytosol, plastid	78.88	79.17
CDY18509	Canola	cytosol	78.5	79.1
CDX95541	Canola	cytosol, plastid	78.88	79.03
PGSC0003DMT400014441	Potato	plastid	79.25	78.66
Solyc03g118910.1.1	Tomato	plastid	79.07	78.48
Bra022292.1-P	Field mustard	cytosol, plastid	78.13	78.42
AT3G18190.1	Thale cress	cytosol, plastid	78.13	77.99
GSMUA_Achr6P09540_001	Banana	cytosol	53.08	77.38
KRH49364	Soybean	endoplasmic reticulum, nucleus	73.83	77.3
Zm00001d007960_P001	Maize	cytosol	36.64	35.77
Zm00001d018694_P002	Maize	cytosol	36.07	35.22
Zm00001d008369_P001	Maize	cytosol, nucleus	31.59	32.19
Zm00001d040257_P001	Maize	cytosol	31.59	32.19
Zm00001d052056_P005	Maize	plasma membrane	31.78	31.19
Zm00001d053857_P002	Maize	cytosol	31.78	30.36
Zm00001d018349_P001	Maize	cytosol	30.84	30.28
Zm00001d028183_P002	Maize	cytosol	29.53	28.32
Zm00001d007192_P001	Maize	cytosol	26.17	25.97
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	26.17	25.55
Zm00001d007508_P005	Maize	cytosol	26.17	24.43
Zm00001d053553_P002	Maize	cytosol	29.72	24.39
Zm00001d040688_P001	Maize	cytosol	12.15	23.13
Zm00001d052882_P001	Maize	plastid	16.82	17.75

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100381530	MapMan:20.3.1.4	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:BT061541
UniProt:C0HGT5	InterPro:Chap_CCT_delta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	ProteinID:ONL92943.1
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF26
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02342	UniParc:UPI0001948B01
EnsemblPlantsGene:Zm00001d027371	EnsemblPlants:Zm00001d027371_P001	EnsemblPlants:Zm00001d027371_T001	SEG:seg	:	:

Description

T-complex protein 1 subunit delta

Coordinates

chr1:+:3912856..3917063

Molecular Weight (calculated)

57736.4 Da

IEP (calculated)

7.240

GRAVY (calculated)

0.077

Length

535 amino acids

Sequence
(BLAST)

001: MAAAVAAPAP SRKTETYTDT KRRDDVRGAN IAAARAVADA VRTSLGPRGM DKMIASGDQA QEVIITNDGA TILSRMALLQ PAARMLAELS RSQDAAAGDG
101: TTTVVVLAGS LLRRAQSLLS AGAHPTAAAD ALHRLATRAV EILHAMAIPI ELSDRESLVK SASTALNSKV VSQYSTLLSP LAVDAALSVV DPAHPDLLDL
201: RDIRIVKKLG GTVDDTELIP GLIFDKKASH AAGGPTRMEN AKIAVIQFQI SPPKTDIEQS VIVSDYAQMD RILREERNYI LGMVKKIKAA GCNVLLIQKS
301: ILRDAVTDLS LHYLAKAKIL VVKDVERDEM EFITKTLNCL PIANIEHFRT DKFGYADVVE EVSVGEGKVV KITGIKDMGR TATVLVRGSN QLVIDEAERS
401: LHDALCVIRC LVSKRFLIAG GGAPEIEMSM QLAAWAKELR GMESYCIKEF AEALEVIPYT LAENAGLNPI SIVTELRNRH ARGEKNTGIN VRKGQITNIL
501: EENVVQPLLV STSAITLACE CVRMILKIDD IVTVR

Best Arabidopsis Sequence Match ( AT3G18190.1 )
(BLAST)

001: MAAVAAPMAS KPRGSKAESF VDNKRREDIR FANINSARAV SDAVRTSLGP KGMDKMISTA NGEVIITNDG ATILNKMEVL QPAAKMLVEL SKSQDSAAGD
101: GTTTVVVIAG ALLKECQSLL TNGIHPTVIS DSLHKACGKA IDILTAMAVP VELTDRDSLV KSASTSLNSK VVSQYSTLLA PLAVDAVLSV IDPEKPEIVD
201: LRDIKIVKKL GGTVDDTHTV KGLVFDKKVS RAAGGPTRVE NAKIAVIQFQ ISPPKTDIEQ SIVVSDYTQM DRILKEERNY ILGMIKKIKA TGCNVLLIQK
301: SILRDAVTDL SLHYLAKAKI MVIKDVERDE IEFVTKTLNC LPIANIEHFR AEKLGHADLV EEASLGDGKI LKITGIKDMG RTTSVLVRGS NQLVLDEAER
401: SLHDALCVVR CLVSKRFLIA GGGAPEIELS RQLGAWAKVL HGMEGYCVKS FAEALEVIPY TLAENAGLNP IAIVTELRNK HAQGEINAGI NVRKGQITNI
501: LEENVVQPLL VSTSAITLAT ECVRMILKID DIVTVR

Arabidopsis Description

CCT4T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.