Factsheet for Zm00001d053857_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005813_P002
Zm00001d006860_P001
Zm00001d007508_P005
Zm00001d020614_P001
Zm00001d022139_P001
Zm00001d029448_P001
Zm00001d052948_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	Zm00001d005813_P002	AT1G19180.1	21798944
AT3G11830.1	Zm00001d006860_P001	AT1G19180.1	21798944
AT3G11830.1	Zm00001d020614_P001	AT1G19180.1	21798944
AT3G11830.1	Zm00001d022139_P001	AT1G19180.1	21798944
AT3G11830.1	Zm00001d029448_P001	AT1G19180.1	21798944
AT3G11830.1	Zm00001d007508_P005	AT3G03960.1	21798944
AT3G11830.1	Zm00001d052948_P001	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04545	Sorghum	cytosol	98.57	98.57
Os06t0687700-01	Rice	plasma membrane	51.79	96.03
HORVU6Hr1G025270.1	Barley	cytosol	93.39	93.9
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	93.21	93.72
TraesCS6B01G159800.1	Wheat	cytosol	92.86	93.36
TraesCS6D01G121300.1	Wheat	cytosol	92.86	93.36
GSMUA_Achr2P21510_001	Banana	cytosol	84.64	92.4
AT3G11830.1	Thale cress	cytosol	90.54	91.02
VIT_00s0670g00010.t01	Wine grape	cytosol	91.25	90.93
CDY08491	Canola	cytosol	81.79	90.87
CDY01062	Canola	cytosol	81.79	90.87
Solyc06g065520.2.1	Tomato	nucleus, plastid	90.54	90.86
PGSC0003DMT400067201	Potato	cytosol	90.36	90.68
Bra038682.1-P	Field mustard	cytosol	89.29	90.09
CDX73850	Canola	cytosol	82.5	90.06
CDY53919	Canola	cytosol	81.79	89.63
KRH73433	Soybean	endoplasmic reticulum, nucleus	89.46	89.46
Bra034807.1-P	Field mustard	cytosol	84.82	89.45
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	89.29	89.29
Bra001423.1-P	Field mustard	cytosol	88.75	88.75
CDY67306	Canola	cytosol	53.04	87.87
GSMUA_Achr8P16590_001	Banana	plastid	92.14	85.15
Zm00001d040257_P001	Maize	cytosol	34.46	36.76
Zm00001d008369_P001	Maize	cytosol, nucleus	33.75	36.0
Zm00001d052056_P005	Maize	plasma membrane	33.93	34.86
Zm00001d018349_P001	Maize	cytosol	33.93	34.86
Zm00001d051742_P001	Maize	plastid	30.89	32.34
Zm00001d027371_P001	Maize	plasma membrane	30.36	31.78
Zm00001d028183_P002	Maize	cytosol	29.82	29.93
Zm00001d007960_P001	Maize	cytosol	28.75	29.38
Zm00001d018694_P002	Maize	cytosol	28.57	29.2
Zm00001d040688_P001	Maize	cytosol	14.46	28.83
Zm00001d052948_P001	Maize	cytosol, extracellular, mitochondrion	25.36	25.91
Zm00001d007192_P001	Maize	cytosol	24.46	25.42
Zm00001d053553_P002	Maize	cytosol	29.46	25.31
Zm00001d007508_P005	Maize	cytosol	25.18	24.61
Zm00001d052882_P001	Maize	plastid	16.96	18.74

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100272855	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:AQK60529.1
ProteinID:AQK60534.1	ProteinID:AQK60535.1	UniProt:B4FBP0	EMBL:BT034528	EMBL:BT039601	InterPro:Chap_CCT_eta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0046686	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI00017B63FC
EnsemblPlantsGene:Zm00001d053857	EnsemblPlants:Zm00001d053857_P002	EnsemblPlants:Zm00001d053857_T002	SEG:seg	:	:

Description

T-complex protein 1 subunit eta

Coordinates

chr4:-:242293269..242298482

Molecular Weight (calculated)

60303.5 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.130

Length

560 amino acids

Sequence
(BLAST)

001: MSAMMQPQII LLKEGTDTSQ GRAQVVSNIN ACTAVGDTVR TTLGPRGMDK LIHDDKGGVT ISNDGATIMR LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPYIEDGVH PHSLIRSYRT AGNMAIQRVK ELAVSIEGKS LEEKKSLLAK CAATTLSSKL IGGEKEFFAS MVVDAVLAIG NDDRLNLIGI
201: KKVPGGTMRD SFLVNGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPLQYQSIV DAEWNIIYDK LDKCVKSGAK IVLSRLAIGD
301: LGTQYFADRD IFCAGRVTEE DLQRVAAATG GTVQTSVNNV INDVLGSCEV FEEKQVGNER FNIFSGCPSG QTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RALKNSTVVP GGGAIDMEIS KYLRQHARTI AGKSQFFVNS FAKALEVIPR QLCDNAGFDA TDVLNKLRQK HASGEGANYG VDINTGGITD SFANFVWEPA
501: VVKINAINAA TEASCLILSV DETVKNPKSE SAQGEAAAGA MAGRGRGAMR GRGGRGMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.