CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08492
KRH70153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	KRH08492	AT3G03960.1	21798944
AT3G11830.1	KRH70153	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	98.04	98.04
Os06t0687700-01	Rice	plasma membrane	50.18	93.05
VIT_00s0670g00010.t01	Wine grape	cytosol	93.21	92.88
Solyc06g065520.2.1	Tomato	nucleus, plastid	90.89	91.22
PGSC0003DMT400067201	Potato	cytosol	90.71	91.04
CDY01062	Canola	cytosol	81.79	90.87
CDY08491	Canola	cytosol	81.79	90.87
AT3G11830.1	Thale cress	cytosol	90.36	90.84
GSMUA_Achr2P21510_001	Banana	cytosol	82.86	90.45
Bra038682.1-P	Field mustard	cytosol	89.46	90.27
CDX73850	Canola	cytosol	82.68	90.25
EES04545	Sorghum	cytosol	90.0	90.0
CDY53919	Canola	cytosol	81.96	89.82
Bra034807.1-P	Field mustard	cytosol	85.0	89.64
Zm00001d053857_P002	Maize	cytosol	89.46	89.46
Bra001423.1-P	Field mustard	cytosol	88.75	88.75
CDY67306	Canola	cytosol	53.39	88.46
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	87.5	87.97
TraesCS6D01G121300.1	Wheat	cytosol	87.14	87.61
TraesCS6B01G159800.1	Wheat	cytosol	87.14	87.61
HORVU6Hr1G025270.1	Barley	cytosol	87.14	87.61
GSMUA_Achr8P16590_001	Banana	plastid	91.07	84.16
KRH62761	Soybean	mitochondrion	18.75	77.21
KRH76087	Soybean	cytosol, endoplasmic reticulum	19.29	68.79
KRH57568	Soybean	cytosol	13.39	68.18
KRH33254	Soybean	cytosol	6.25	44.3
KRH59103	Soybean	nucleus	34.82	35.78
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	34.82	35.78
KRH25193	Soybean	nucleus	33.21	35.29
KRH30467	Soybean	nucleus	33.04	35.1
KRH41771	Soybean	endoplasmic reticulum, nucleus	30.54	32.08
KRH60476	Soybean	endoplasmic reticulum	30.36	31.89
KRH49364	Soybean	endoplasmic reticulum, nucleus	28.93	31.7
KRG97508	Soybean	cytosol, nucleus	28.93	30.28
KRH31372	Soybean	nucleus	28.93	30.28
KRH38791	Soybean	cytosol	29.82	30.14
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	29.64	29.96
KRG92501	Soybean	cytosol	28.57	28.73
KRH46911	Soybean	endoplasmic reticulum	25.18	26.36
KRH01781	Soybean	nucleus	24.82	25.98
KRH62778	Soybean	cytosol, endoplasmic reticulum	16.25	25.93
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	24.64	25.32
KRH70153	Soybean	nucleus	24.46	25.14

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100784862	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02001277
InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_02G273200	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	UniProt:I1JIP5	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH73433
ProteinID:KRH73433	ProteinID:KRH73433.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI000233703D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:45674930..45681337

Molecular Weight (calculated)

60275.4 Da

IEP (calculated)

6.531

GRAVY (calculated)

-0.082

Length

560 amino acids

Sequence
(BLAST)

001: MSAMLQPQII LLKEGTDTSQ GKPQVVSNIN ACTAVADVVR TTLGPRGMDK LIHDDKGTVT ISNDGATIMK LLDIVHPAAR ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLRE AKPFIEDGVH SQNLIRSYRT ACSLAIEKIK DLAVSIEGKS LEEKKNLLAK CASTTLSSKL IGGEKEFFAP MVVDAVISIG NEDRLNMIGI
201: KKVPGGTMRD SFLVNGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNVELELK SEKENAEIRL SDPAQYQSIV DAEWNIIYDK LDKCVSSGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLKRVAAATG GTVQTSVNNV IDEVLGTCEV FEERQVGNER FNIFSGCSSG QTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RALKNSTVVA GGGAIDMEIS RYLRQHARTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HALPSGEGGP YGVDIATGGI ADSFANFVWE
501: PAIVKINAIN AATEAACLIL SVDETIKNPK SESAQGDAAA SAMGRGRGGA FRGRGRGMRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.