CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38791	Soybean	cytosol	87.75	55.6
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	86.04	54.51
KRG92501	Soybean	cytosol	80.91	50.99
KRH60476	Soybean	endoplasmic reticulum	25.64	16.89
KRH41771	Soybean	endoplasmic reticulum, nucleus	25.64	16.89
KRG97508	Soybean	cytosol, nucleus	25.07	16.45
KRH31372	Soybean	nucleus	25.07	16.45
KRH49364	Soybean	endoplasmic reticulum, nucleus	23.93	16.44
KRH73433	Soybean	endoplasmic reticulum, nucleus	25.93	16.25
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	25.36	15.89
KRH70153	Soybean	nucleus	22.79	14.68
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	22.22	14.31
KRH30467	Soybean	nucleus	21.08	14.04
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	21.65	13.95
KRH59103	Soybean	nucleus	21.65	13.95
KRH25193	Soybean	nucleus	20.8	13.85
KRH46911	Soybean	endoplasmic reticulum	19.94	13.08
KRH01781	Soybean	nucleus	19.94	13.08
KRH57568	Soybean	cytosol	1.14	3.64
KRH62761	Soybean	mitochondrion	0.57	1.47
KRH76087	Soybean	cytosol, endoplasmic reticulum	0.57	1.27
KRH33254	Soybean	cytosol	0.28	1.27

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.3	Gene3D:3.50.7.10	UniProt:A0A0R0K7Z5	EMBL:ACUP02002357	InterPro:Cpn60/TCP-1
EnsemblPlantsGene:GLYMA_04G131400	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH62778
ProteinID:KRH62778	ProteinID:KRH62778.1	PFAM:PF00118	PANTHER:PTHR11353	PANTHER:PTHR11353:SF24	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0006EDE621	:	:

Description

hypothetical protein

Coordinates

chr4:-:18456734..18458380

Molecular Weight (calculated)

38398.4 Da

IEP (calculated)

6.274

GRAVY (calculated)

-0.280

Length

351 amino acids

Sequence
(BLAST)

001: KSCIGTKFTS QFGDLIADLA IEATTTVGVE IGQGLTDVDI KNYIKVEKVP GGQLEDSRVL KGVMIKKDVV NPHIILLDSP LEYKKGENQT NVELLKEEDW
101: ILLLKMEEEY IEQLCMHILK FKPDLGLTDL ATHYLSKHGV SAMRRLSKSD NNRIAKASGV ESDVGTGAGL FEVNKIGEEY FSYIVNCKEP KACTILLRGA
201: SKDLLNEVER NPQDAMSVAR NIIKNPKLVP RGGAIELTVL AGLKQKSSSI EGIEKCPYEA AAVAFEAIPR TLAQNCGVNV IRTMTGLQGK HANRENYEGW
301: QGSEGTKSSC MLLRIHDIVS GMKKKQAPGA PPSKLKVETE ADADSEQILA D

Best Arabidopsis Sequence Match ( AT5G26360.1 )
(BLAST)

001: MHAPVLVLSD SLKRESGSKV HHGNIQASKA VADIIRTTLG PRSMLKMLLD AGGGIVVTND GNAILRELDV AHPAAKSMIE LSRTQDEEVG DGTTSVIVLA
101: GEMLHVAEAF LEKNYHPTVI CRAYIKALED SIAVLDKIAM SIDINDRSQV LGLVKSCIGT KFTSQFGDLI ADLAIDATTT VGVDLGQGLR EVDIKKYIKV
201: EKVPGGQFED SEVLKGVMFN KDVVAPGKMK RKIVNPRIIL LDCPLEYKKG ENQTNAELVR EEDWEVLLKL EEEYIENICV QILKFKPDLV ITEKGLSDLA
301: CHYFSKAGVS AIRRLRKTDN NRIAKACGAV IVNRPDELQE SDIGTGAGLF EVKKIGDDFF SFIVDCKEPK ACTVLLRGPS KDFINEVERN LQDAMSVARN
401: IIKNPKLVPG GGATELTVSA TLKQKSATIE GIEKWPYEAA AIAFEAIPRT LAQNCGVNVI RTMTALQGKH ANGENAWTGI DGNTGAIADM KESKIWDSYN
501: VKAQTFKTAI EAACMLLRID DIVSGIKKKQ APGSGPSKPT IETEGDADNE QILPD

Arabidopsis Description

CCT3T-complex protein 1 subunit gamma [Source:UniProtKB/TrEMBL;Acc:A0A178UHF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.