CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62761	Soybean	mitochondrion	64.55	52.21
KRH76087	Soybean	cytosol, endoplasmic reticulum	66.36	46.5
CDY43747	Canola	cytosol	42.73	36.72
CDY11302	Canola	cytosol	42.73	36.72
KRH33254	Soybean	cytosol	23.64	32.91
CDY47913	Canola	cytosol	66.36	27.97
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	70.91	13.93
KRH73433	Soybean	endoplasmic reticulum, nucleus	68.18	13.39
KRH59103	Soybean	nucleus	38.18	7.71
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	38.18	7.71
KRG97508	Soybean	cytosol, nucleus	35.45	7.29
KRH31372	Soybean	nucleus	35.45	7.29
KRH30467	Soybean	nucleus	34.55	7.21
KRH25193	Soybean	nucleus	34.55	7.21
KRH49364	Soybean	endoplasmic reticulum, nucleus	32.73	7.05
KRH41771	Soybean	endoplasmic reticulum, nucleus	33.64	6.94
KRH60476	Soybean	endoplasmic reticulum	33.64	6.94
KRG92501	Soybean	cytosol	33.64	6.64
KRH38791	Soybean	cytosol	32.73	6.5
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	32.73	6.5
KRH70153	Soybean	nucleus	29.09	5.87
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	28.18	5.69
KRH46911	Soybean	endoplasmic reticulum	24.55	5.05
KRH01781	Soybean	nucleus	24.55	5.05
KRH62778	Soybean	cytosol, endoplasmic reticulum	3.64	1.14

Protein Annotations

Gene3D:1.10.560.10	MapMan:35.1	EMBL:ACUP02002857	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1
EnsemblPlantsGene:GLYMA_05G069300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	UniProt:I1K101
InterPro:IPR027413	EnsemblPlants:KRH57568	ProteinID:KRH57568	ProteinID:KRH57568.1	PFAM:PF00118	PRINTS:PR00304
PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	UniParc:UPI00023C4336	:	:

Description

hypothetical protein

Coordinates

chr5:-:7197902..7198540

Molecular Weight (calculated)

12271.1 Da

IEP (calculated)

7.072

GRAVY (calculated)

0.115

Length

110 amino acids

Sequence
(BLAST)

001: MGMIHRKPQL LSNINACTAV VDIVRTTLDP RGMDKLIHDD KGAVTISNDD ATIMKLLDIV HPAAKILADI AKSQDSEVTL TSLRSHAMPL LSRSVHFRFI
101: QMLYTVELEF

Best Arabidopsis Sequence Match ( AT3G11830.2 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDISKY LRQHSRTIAG KSQLFINSYA KALEVIPRQL CDNAGFDATD VLNKLRQKHA MQSGEGASYG VDINTGGIAD SFANFVWEPA
501: VVKINAINAA TEAACLILSV DETVKNPKSE SAQGDAAGAM GRGRGGGRGR GMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.