CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01781	Soybean	nucleus	99.25	99.25
VIT_14s0006g03200.t01	Wine grape	cytosol	93.46	93.46
GSMUA_Achr1P14710_001	Banana	cytosol	92.15	92.15
Solyc02g085790.2.1	Tomato	extracellular	91.96	91.96
PGSC0003DMT400033011	Potato	cytosol	91.59	91.59
GSMUA_Achr4P16540_001	Banana	cytosol	91.59	91.59
PGSC0003DMT400062134	Potato	cytosol	91.22	91.22
Solyc02g063090.2.1	Tomato	nucleus, unclear	91.03	91.03
Bra040591.1-P	Field mustard	cytosol	90.28	90.28
AT3G02530.1	Thale cress	cytosol	90.28	90.28
CDY28697	Canola	cytosol	90.09	90.09
CDY51544	Canola	cytosol	90.09	90.09
AT5G16070.1	Thale cress	cytosol	89.72	89.72
CDY26490	Canola	cytosol	89.72	89.55
CDX69477	Canola	cytosol	89.72	89.55
Bra008652.1-P	Field mustard	cytosol	89.72	89.55
CDX78670	Canola	cytosol	89.35	89.35
CDX70671	Canola	cytosol	89.35	89.35
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	88.41	88.41
Bra006338.1-P	Field mustard	cytosol	74.39	87.67
EER97762	Sorghum	cytosol	87.48	87.48
Zm00001d007192_P001	Maize	cytosol	87.66	87.01
TraesCS6D01G383500.1	Wheat	unclear	84.49	84.49
TraesCS6A01G399300.1	Wheat	golgi	84.49	84.49
HORVU6Hr1G091690.4	Barley	cytosol, plastid	84.67	79.47
KRH33254	Soybean	cytosol	5.23	35.44
KRH30467	Soybean	nucleus	29.16	29.6
KRH25193	Soybean	nucleus	28.97	29.41
KRH31372	Soybean	nucleus	26.92	26.92
KRG97508	Soybean	cytosol, nucleus	26.92	26.92
KRH41771	Soybean	endoplasmic reticulum, nucleus	26.73	26.83
KRH60476	Soybean	endoplasmic reticulum	26.54	26.64
KRH49364	Soybean	endoplasmic reticulum, nucleus	25.42	26.61
KRH59103	Soybean	nucleus	26.92	26.42
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	26.92	26.42
KRG92501	Soybean	cytosol	26.73	25.67
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	26.73	25.54
KRH73433	Soybean	endoplasmic reticulum, nucleus	26.36	25.18
KRH62761	Soybean	mitochondrion	6.36	25.0
KRH38791	Soybean	cytosol	25.79	24.91
KRH09301	Soybean	cytosol, endoplasmic reticulum, nucleus	25.61	24.73
KRH57568	Soybean	cytosol	5.05	24.55
KRH08492	Soybean	cytosol, endoplasmic reticulum, nucleus	24.67	24.22
KRH70153	Soybean	nucleus	24.49	24.04
KRH76087	Soybean	cytosol, endoplasmic reticulum	6.92	23.57
KRH62778	Soybean	cytosol, endoplasmic reticulum	13.08	19.94

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100809943	MapMan:20.3.1.6	Gene3D:3.50.7.10	EMBL:ACUP02005367	InterPro:Chap_CCT_zeta
InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_08G364000	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832	GO:GO:0006457	GO:GO:0006458
GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	UniProt:I1KZK2	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH46911
ProteinID:KRH46911	ProteinID:KRH46911.1	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751
PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02347	UniParc:UPI0002337F8E	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:47536372..47542812

Molecular Weight (calculated)

58955.5 Da

IEP (calculated)

5.590

GRAVY (calculated)

-0.159

Length

535 amino acids

Sequence
(BLAST)

001: MSLRVLNPNA EVLNKSAALH MNINAAKGLQ DVLKTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDASGDG TTSTVIFIGE
101: LMKQSERYID EGMHPRVLVD GFDIAKRATL QFLEKFKTPV VMGGEPDKEI LKMVARTTVR TKLYESLADQ LTDIIVDAVL CIQKPEEEID LFMVEIMHMR
201: HKFDVDTRLV EGIVLDHGSR HPDMKRRAEN CYILTCNVSL EYEKSEVNSG FFYSSAEQRE AMVAAERRQV DEKVKKIIEL KNKVCSGNDS NFVVLNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPECLGWA GLVYEHVLGE EKYTFVENVK NPFSCTILIK GPNDHTIAQI KDAVRDGLRA
401: VKNTLEDESV VLGAGAFEVA ARQYLMNEVK KTVQGRAQLG VEAFADALLV VPKTLAENSG LDTQDVIIAL TGEHDKGNIV GLSLNTGEPI DPAMEGIFDN
501: YSVKRQIINS GPVIVSQLLV VDEVIRAGRN MRKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.