Factsheet for Solyc02g085790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 26371478
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033011	Potato	cytosol	99.25	99.25
Solyc02g063090.2.1	Tomato	nucleus, unclear	97.01	97.01
VIT_14s0006g03200.t01	Wine grape	cytosol	93.27	93.27
GSMUA_Achr1P14710_001	Banana	cytosol	92.52	92.52
KRH46911	Soybean	endoplasmic reticulum	91.96	91.96
KRH01781	Soybean	nucleus	91.96	91.96
GSMUA_Achr4P16540_001	Banana	cytosol	91.96	91.96
Bra008652.1-P	Field mustard	cytosol	91.78	91.6
CDX69477	Canola	cytosol	91.78	91.6
CDY26490	Canola	cytosol	91.78	91.6
CDX70671	Canola	cytosol	91.59	91.59
CDX78670	Canola	cytosol	91.59	91.59
AT3G02530.1	Thale cress	cytosol	91.4	91.4
AT5G16070.1	Thale cress	cytosol	91.22	91.22
CDY51544	Canola	cytosol	90.84	90.84
CDY28697	Canola	cytosol	90.84	90.84
Bra040591.1-P	Field mustard	cytosol	90.84	90.84
Bra006338.1-P	Field mustard	cytosol	76.82	90.53
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	89.53	89.53
EER97762	Sorghum	cytosol	88.6	88.6
Zm00001d007192_P001	Maize	cytosol	88.78	88.13
TraesCS6A01G399300.1	Wheat	golgi	86.54	86.54
TraesCS6D01G383500.1	Wheat	unclear	86.54	86.54
HORVU6Hr1G091690.4	Barley	cytosol, plastid	86.73	81.4
Solyc11g069000.1.1	Tomato	extracellular	28.79	29.28
Solyc05g013990.2.1	Tomato	nucleus	26.73	26.73
Solyc01g090750.2.1	Tomato	nucleus	26.54	26.05
Solyc05g056310.2.1	Tomato	extracellular, plastid	26.92	25.85
Solyc06g065520.2.1	Tomato	nucleus, plastid	25.79	24.73
Solyc03g118910.1.1	Tomato	plastid	24.86	24.68
Solyc01g088080.2.1	Tomato	nucleus	24.67	24.4

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:K4BB90	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353
PANTHER:PTHR11353:SF21	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc02g085790.2	EnsemblPlants:Solyc02g085790.2.1
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347	UniParc:UPI00027675D3	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:48564824..48572133

Molecular Weight (calculated)

58978.5 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.197

Length

535 amino acids

Sequence
(BLAST)

001: MSVKVLNPNA EVLNKSAALH MNINAAKGLQ DVLKTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAVMIARTA VAQDDTSGDG TTSTVLFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLEKFKTPV VMGDEPDKEI LKMVARTTLR TKLYESLADQ LTDIVANSVL CIRKPEEAID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CYIMTCNVSL EYEKSEVNAG FFYSNAEQRE AMVAAERRSV DERVQKIIDL KNKVCSGNDN NFVVINQKGI
301: DPTSLDLLAR EGIIALRRAK RRNMERLVLA CGGDAVNSVD DLTPECLGWA GLVYEHVLGE EKYTFVENVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRA
401: VKNTIEDEAV ILGAGAFEVA ARQYLINEVK KTVKGRAQLG VEAFANALLV IPKTLAENSG LDTQDVIIAL TGEHDKGNIV GLNQHTGEPI DPQMEGIFDN
501: YAVKRQIVNS GPVIASQLLL VDEVIRAGRN MRKPT

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.