Factsheet for GSMUA_Achr4P16540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14710_001	Banana	cytosol	97.57	97.57
VIT_14s0006g03200.t01	Wine grape	cytosol	95.51	95.51
Os05t0147400-01	Rice	cytosol, plasma membrane, plastid	92.52	92.52
Solyc02g085790.2.1	Tomato	extracellular	91.96	91.96
KRH01781	Soybean	nucleus	91.59	91.59
KRH46911	Soybean	endoplasmic reticulum	91.59	91.59
PGSC0003DMT400033011	Potato	cytosol	91.59	91.59
PGSC0003DMT400062134	Potato	cytosol	91.59	91.59
Solyc02g063090.2.1	Tomato	nucleus, unclear	91.59	91.59
EER97762	Sorghum	cytosol	91.03	91.03
AT3G02530.1	Thale cress	cytosol	90.65	90.65
Zm00001d007192_P001	Maize	cytosol	91.22	90.54
Bra040591.1-P	Field mustard	cytosol	90.47	90.47
CDY51544	Canola	cytosol	90.28	90.28
CDY28697	Canola	cytosol	90.28	90.28
CDY26490	Canola	cytosol	90.28	90.11
CDX69477	Canola	cytosol	90.28	90.11
Bra008652.1-P	Field mustard	cytosol	90.28	90.11
CDX78670	Canola	cytosol	90.09	90.09
CDX70671	Canola	cytosol	90.09	90.09
AT5G16070.1	Thale cress	cytosol	89.91	89.91
Bra006338.1-P	Field mustard	cytosol	75.33	88.77
TraesCS6D01G383500.1	Wheat	unclear	88.6	88.6
TraesCS6A01G399300.1	Wheat	golgi	88.6	88.6
HORVU6Hr1G091690.4	Barley	cytosol, plastid	88.22	82.81
GSMUA_Achr2P01800_001	Banana	cytosol	27.48	27.89
GSMUA_Achr3P20910_001	Banana	cytosol	17.76	27.46
GSMUA_Achr6P06770_001	Banana	cytosol	24.49	27.12
GSMUA_AchrUn_...	Banana	cytosol	27.1	27.1
GSMUA_Achr3P24440_001	Banana	peroxisome	26.92	26.18
GSMUA_Achr11P...	Banana	cytosol	26.17	25.36
GSMUA_Achr3P25570_001	Banana	cytosol	25.23	24.82
GSMUA_Achr8P04580_001	Banana	cytosol	25.23	24.82
GSMUA_Achr6P23290_001	Banana	cytosol	25.61	24.6
GSMUA_Achr5P09040_001	Banana	cytosol	25.42	24.42
GSMUA_Achr2P21510_001	Banana	cytosol	23.18	24.17
GSMUA_Achr6P09540_001	Banana	cytosol	16.45	23.98
GSMUA_Achr8P16590_001	Banana	plastid	25.79	22.77
GSMUA_Achr2P01090_001	Banana	cytosol	15.33	22.71
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	11.59	22.63
GSMUA_Achr9P07660_001	Banana	cytosol	0.19	6.25

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.6	Gene3D:3.50.7.10	InterPro:Chap_CCT_zeta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr4G16540_001	EnsemblPlants:GSMUA_Achr4P16540_001	EnsemblPlants:GSMUA_Achr4T16540_001
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0SPG8	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	PANTHER:PTHR11353	PANTHER:PTHR11353:SF21	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02347	UniParc:UPI000294860A	SEG:seg

Description

T-complex protein 1 subunit zeta [Source:GMGC_GENE;Acc:GSMUA_Achr4G16540_001]

Coordinates

chr4:-:14974552..14983582

Molecular Weight (calculated)

59132.7 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.195

Length

535 amino acids

Sequence
(BLAST)

001: MSLRVLNPNA EVLNKSAALH MNINAAKGLQ DVLRTNLGPK GTIKMLVGGA GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDETSGDG TTSTVLFIGE
101: LMKQSERYID EGMHPRVLVD GFEIAKRATL EFLEKFKTPA VMGDVPDKEI LKMVARTTLR TKLYEALADQ LTDIVVNAVL CIRKPDEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CYILTCNVSL EYEKSEINAG FFYSNAEQRE KMVAAERRQV DERVKKIIEL KNKVCSGNDN NFVIINQKGI
301: DPPSLDLLAR AGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTEDCLGWA GLVYEHILGE EKYTFVENVK NPLSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTIEDEAV VLGAGAFEVA ARQHLVNNVK KTVQGRAQLG VEAFADALLV VPKTLAENSG LDTQDVIIAL TGEHDRGNIV GLNHHTGEPI DSNMEGIFDN
501: YSVKRQIINS GPVIASQLLL VDEVIRAGRN MRKPS

Best Arabidopsis Sequence Match ( AT3G02530.1 )
(BLAST)

001: MSVRVLNPNA EVLNKSAALH MTINAAKGLQ DVLKSNLGPK GTIKMLVGGS GDIKLTKDGN TLLKEMQIQN PTAIMIARTA VAQDDISGDG TTSTVIFIGE
101: LMKQSERCID EGMHPRVLVD GFEIAKRATL QFLDTFKTPV VMGDEPDKEI LKMVARTTLR TKLYEGLADQ LTDIVVNSVL CIRKPQEPID LFMVEIMHMR
201: HKFDVDTRLV EGLVLDHGSR HPDMKRRAEN CHILTCNVSL EYEKSEINAG FFYSNAEQRE AMVTAERRSV DERVQKIIEL KNKVCAGNDN SFVILNQKGI
301: DPPSLDLLAR EGIIALRRAK RRNMERLVLA CGGEAVNSVD DLTPDCLGWA GLVYEHVLGE EKYTFVEQVK NPHSCTILIK GPNDHTIAQI KDAVRDGLRS
401: VKNTLEDECV VLGAGAFEVA ARQHLINEVK KTVQGRAQLG VEAFANALLV VPKTLAENAG LDTQDVIISL TSEHDKGNIV GLDLQDGEPV DPQLAGIFDN
501: YSVKRQLINS GPVIASQLLL VDEVIRAGRN MRKPT

Arabidopsis Description

CCT6AT-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.