Factsheet for GSMUA_Achr2P01090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	86.15	56.34
KRH59103	Soybean	nucleus	81.44	53.95
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	81.44	53.95
VIT_15s0021g02230.t01	Wine grape	cytosol	81.44	53.85
Solyc01g090750.2.1	Tomato	nucleus	78.67	52.11
PGSC0003DMT400066954	Potato	cytosol	78.12	51.74
CDY25374	Canola	cytosol	77.56	51.38
CDY24564	Canola	cytosol	77.29	51.19
CDY42227	Canola	cytosol	77.29	51.19
AT3G20050.1	Thale cress	cytosol	76.45	50.64
CDX82264	Canola	cytosol	76.18	50.46
CDY36063	Canola	cytosol	76.18	50.46
Bra001773.1-P	Field mustard	cytosol	76.18	50.37
Bra035820.1-P	Field mustard	cytosol	77.29	50.18
CDY33444	Canola	cytosol	77.29	49.56
Bra038252.1-P	Field mustard	cytosol	77.29	36.66
GSMUA_Achr9P07660_001	Banana	cytosol	1.11	25.0
GSMUA_Achr2P01800_001	Banana	cytosol	32.96	22.58
GSMUA_Achr3P24440_001	Banana	peroxisome	32.69	21.45
GSMUA_Achr8P16590_001	Banana	plastid	33.8	20.13
GSMUA_Achr2P21510_001	Banana	cytosol	28.25	19.88
GSMUA_AchrUn_...	Banana	cytosol	29.09	19.63
GSMUA_Achr6P06770_001	Banana	cytosol	24.93	18.63
GSMUA_Achr3P20910_001	Banana	cytosol	17.73	18.5
GSMUA_Achr6P09540_001	Banana	cytosol	18.01	17.71
GSMUA_Achr6P23290_001	Banana	cytosol	26.87	17.41
GSMUA_Achr5P09040_001	Banana	cytosol	26.87	17.41
GSMUA_Achr3P25570_001	Banana	cytosol	25.76	17.1
GSMUA_Achr8P04580_001	Banana	cytosol	25.48	16.91
GSMUA_Achr1P14710_001	Banana	cytosol	22.99	15.51
GSMUA_Achr4P16540_001	Banana	cytosol	22.71	15.33
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	7.48	9.85

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr2G01090_001	EnsemblPlants:GSMUA_Achr2P01090_001	EnsemblPlants:GSMUA_Achr2T01090_001
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0S450	PFAM:PF00118
PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF177
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI000294B717	:

Description

T-complex protein 1 subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr2G01090_001]

Coordinates

chr2:+:6231760..6238188

Molecular Weight (calculated)

39653.0 Da

IEP (calculated)

8.608

GRAVY (calculated)

0.153

Length

361 amino acids

Sequence
(BLAST)

001: MAIVAQTPDI LGERQSGQDV RTQNVVACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVILA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYVEEKLA TKVEKLGKDS LVNCAKTSMS SKLIATDSDF FANLVVDAVQ AVKTTNARGE VKYPVKSINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPI RVAPARIACL DFNLQKTKMQ MGVQVLVTDP RELEKIRERE ADITKERIQK LLKAGANVVL TTKGIDDMSL
301: KACLLNLHFS CLVKFNLLFV LYCVHHLCLQ FFFRISHIFF LCKLCINIED VCGGVVKIHL M

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.