Factsheet for GSMUA_Achr11P16330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02230.t01	Wine grape	cytosol	92.03	93.04
KRH42973	Soybean	cytosol, endoplasmic reticulum, nucleus	90.22	91.38
KRH59103	Soybean	nucleus	90.04	91.19
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	44.38	89.42
Solyc01g090750.2.1	Tomato	nucleus	87.68	88.81
PGSC0003DMT400066954	Potato	cytosol	87.32	88.44
AT3G20050.1	Thale cress	cytosol	86.78	87.89
CDY25374	Canola	cytosol	86.59	87.71
CDY42227	Canola	cytosol	86.41	87.52
CDY24564	Canola	cytosol	86.23	87.34
CDX82264	Canola	cytosol	85.87	86.97
CDY36063	Canola	cytosol	85.87	86.97
Bra001773.1-P	Field mustard	cytosol	85.87	86.81
GSMUA_Achr2P01090_001	Banana	cytosol	56.34	86.15
Bra035820.1-P	Field mustard	cytosol	86.41	85.79
CDY33444	Canola	cytosol	86.23	84.55
Bra038252.1-P	Field mustard	cytosol	86.41	62.68
GSMUA_Achr2P01800_001	Banana	cytosol	34.06	35.67
GSMUA_Achr3P20910_001	Banana	cytosol	22.28	35.55
GSMUA_Achr2P21510_001	Banana	cytosol	31.88	34.31
GSMUA_Achr3P24440_001	Banana	peroxisome	33.88	34.0
GSMUA_AchrUn_...	Banana	cytosol	31.7	32.71
GSMUA_Achr8P16590_001	Banana	plastid	35.69	32.51
GSMUA_Achr6P06770_001	Banana	cytosol	28.08	32.09
GSMUA_Achr6P09540_001	Banana	cytosol	19.75	29.7
GSMUA_Achr6P23290_001	Banana	cytosol	29.17	28.9
GSMUA_Achr5P09040_001	Banana	cytosol	28.8	28.55
GSMUA_Achr3P25570_001	Banana	cytosol	27.72	28.12
GSMUA_Achr8P04580_001	Banana	cytosol	27.17	27.57
GSMUA_Achr1P14710_001	Banana	cytosol	25.91	26.73
GSMUA_Achr4P16540_001	Banana	cytosol	25.36	26.17
GSMUA_Achr9P07660_001	Banana	cytosol	0.72	25.0

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_alpha	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr11G16330_001
EnsemblPlants:GSMUA_Achr11P16330_001	EnsemblPlants:GSMUA_Achr11T16330_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0RSR3	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF177	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02340	UniParc:UPI0002962E86	SEG:seg	:	:	:

Description

T-complex protein 1 subunit alpha [Source:GMGC_GENE;Acc:GSMUA_Achr11G16330_001]

Coordinates

chr11:+:18020526..18030973

Molecular Weight (calculated)

59911.6 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.038

Length

552 amino acids

Sequence
(BLAST)

001: MAIVAQTPDI LGERQSGQDV RTQNVVACQA VANIVKSSLG PVGLDKMLVD DIGDVTITND GATILKMLEV EHPAAKVLVE LAELQDREVG DGTTSVVILA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE ACKYVDEKLA VKVEKLGKDS LVNCAKTSMS SKLIAIDSDF FANLVVDAVQ GVKTTNARGE VKYPIKSINI
201: LKAHGKSAKD SYLLNGYALN TGRAAQGMPT KVAPARIACL DFNLQKTKMQ MGVQVLVTDP RELEKIRERE ADITKERIQK LLKAGANVVL TTKGIDDMSL
301: KACISQLYFV EAGAIAVRRV RKEDLRHVAK ATGATVVTTF ADMEGEETFD SSFLGHADEV IEERIADDDV ILIKGTKNTS AVSLILRGAN DYMLDEMDRA
401: LHDALCIVKR TLESNTVVAG GGAVEAALSV YLEYLATTLG SREQLAIAEF AESLLVIPKV LAVNAAKDAT ELVAKLRAYH HTAQTKADKQ HLSSMGLDLS
501: KGTTRNNLEA GVIEPAMSKV KIIQFATEAA ITILRIDDMI RLIKDERENE ED

Best Arabidopsis Sequence Match ( AT3G20050.1 )
(BLAST)

001: MSISAQNPDI SGDRQSGQDV RTQNVMACQA VSNIVKTSLG PVGLDKMLVD DIGDVTITND GATILRMLEV EHPAAKVLVE LAELQDREVG DGTTSVVIVA
101: AELLKRANDL VRNKIHPTSI ISGYRLAMRE SCKYIEEKLV TKVEKLGKVP LINCAKTSMS SKLISGDSDF FANLVVEAVL SVKMTNQRGE IKYPIKGINI
201: LKAHGQSARD SYLLNGYALN TGRAAQGMPL RVSPAKIACL DFNLQKTKMQ LGVQVVVNDP RELEKIRQRE ADMTKERIEK LLKAGANVIL TTKGIDDMAL
301: KYFVEAGAIA VRRVRKEDMR HVAKATGATL VTTFADMEGE ETFDPAHLGS ADEVVEERIA DDDVILIKGT KTSSAVSLIL RGANDYMLDE MERALHDALC
401: IVKRTLESNT VVAGGGAVES ALSVYLEHLA TTLGSREQLA IAEFADALLI IPKVLAVNAA KDATELVAKL RAYHHTAQTK ADKKHYSSMG LDLVNGTIRN
501: NLEAGVIEPA MSKVKIIQFA TEAAITILRI DDMIKLVKDE SQGEE

Arabidopsis Description

CCT1T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.