Factsheet for GSMUA_Achr2P21510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21870_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr3P25570_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P22110_001
GSMUA_Achr6P31050_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P04580_001
GSMUA_Achr8P16780_001
GSMUA_Achr9P14370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT3G11830.1	GSMUA_AchrUn_...	AT1G19180.1	21798944
AT3G11830.1	GSMUA_Achr3P25570_001	AT3G03960.1	21798944
AT3G11830.1	GSMUA_Achr8P04580_001	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0687700-01	Rice	plasma membrane	55.36	94.04
CDY01062	Canola	cytosol	89.08	90.67
CDY08491	Canola	cytosol	89.08	90.67
CDX73850	Canola	cytosol	90.25	90.25
CDY53919	Canola	cytosol	89.47	89.82
CDY67306	Canola	cytosol	58.48	88.76
VIT_00s0670g00010.t01	Wine grape	cytosol	94.15	85.94
EES04545	Sorghum	cytosol	93.18	85.36
Zm00001d053857_P002	Maize	cytosol	92.4	84.64
Solyc06g065520.2.1	Tomato	nucleus, plastid	91.23	83.87
PGSC0003DMT400067201	Potato	cytosol	91.03	83.69
AT3G11830.1	Thale cress	cytosol	90.84	83.66
Bra038682.1-P	Field mustard	cytosol	90.25	83.42
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	90.84	83.21
KRH73433	Soybean	endoplasmic reticulum, nucleus	90.45	82.86
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	89.67	82.59
Bra034807.1-P	Field mustard	cytosol	85.19	82.3
TraesCS6D01G121300.1	Wheat	cytosol	89.28	82.23
TraesCS6B01G159800.1	Wheat	cytosol	89.28	82.23
HORVU6Hr1G025270.1	Barley	cytosol	89.28	82.23
Bra001423.1-P	Field mustard	cytosol	89.47	81.96
GSMUA_Achr8P16590_001	Banana	plastid	96.49	81.68
GSMUA_Achr2P01800_001	Banana	cytosol	34.5	33.59
GSMUA_Achr11P...	Banana	cytosol	34.31	31.88
GSMUA_Achr3P24440_001	Banana	peroxisome	34.11	31.82
GSMUA_Achr6P06770_001	Banana	cytosol	29.24	31.06
GSMUA_Achr2P01100_001	Banana	cytosol, extracellular	16.57	31.02
GSMUA_Achr3P20910_001	Banana	cytosol	20.86	30.92
GSMUA_Achr6P09540_001	Banana	cytosol	21.25	29.7
GSMUA_Achr2P01090_001	Banana	cytosol	19.88	28.25
GSMUA_AchrUn_...	Banana	cytosol	28.85	27.66
GSMUA_Achr6P23290_001	Banana	cytosol	29.43	27.11
GSMUA_Achr5P09040_001	Banana	cytosol	28.85	26.57
GSMUA_Achr1P14710_001	Banana	cytosol	24.56	23.55
GSMUA_Achr8P04580_001	Banana	cytosol	24.95	23.53
GSMUA_Achr4P16540_001	Banana	cytosol	24.17	23.18
GSMUA_Achr3P25570_001	Banana	cytosol	24.37	22.98
GSMUA_Achr9P07660_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr2G21510_001	EnsemblPlants:GSMUA_Achr2P21510_001
EnsemblPlants:GSMUA_Achr2T21510_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M0S9Z2
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353	PANTHER:PTHR11353:SF22
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345	UniParc:UPI000295BE28
SEG:seg	:	:	:	:	:

Description

T-complex protein 1 subunit eta [Source:GMGC_GENE;Acc:GSMUA_Achr2G21510_001]

Coordinates

chr2:+:20946467..20953492

Molecular Weight (calculated)

55498.6 Da

IEP (calculated)

6.534

GRAVY (calculated)

-0.100

Length

513 amino acids

Sequence
(BLAST)

001: MDKLIHDEKG STTISNDGAT IMKLLDIVHP AAKILVDIAK SQDSEVGDGT TTVVLLAGEF LKEAKPFIED GVHPQNLIRS YRTASFLAIN KIKEIAVSIE
101: GKSLEEKKSL LAKCAATTLS SKLIGGEKEF FASMVVDAVL AIGNDDRLNL IGIKKVPGGN MRDSFLVNGV AFKKTFSYAG FEQQPKKFLN PKILLLNIEL
201: ELKSEKENAE IRLSDPLQYQ SIVDAEWNII YDKLDKCVKS GAKIVLSRLA IGDLATQYFA DRDIFCAGRV TEEDLLRVAA ATGGTVQTSV NNVIDEVLGS
301: CEVFEERQVG NERFNIFNGC PSGQTATIVL RGGADQFIDE AERSLHDAIM IVRRALKNST IVPGGGAIDM ELSRYLRLHA RTIAGKSQLF INSYAKALEV
401: IPRQLCDNAG FDSTDVLNKL RQKHASGEGA NFGVEINTGG IADSFANFVW EPAVVKINAI NAATEAACLI LSVDETVKNP KSESAQGEAA ANAMAGRGGP
501: AFRGRGGRGM RRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.