Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P05920_001 | Banana | nucleus | 48.96 | 47.01 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 50.21 | 45.66 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 39.42 | 44.6 |
| GSMUA_Achr10P... | Banana | cytosol | 27.8 | 41.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.49 | 40.49 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 39.83 | 38.87 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 32.37 | 35.29 |
| Solyc07g042170.2.1 | Tomato | cytosol | 30.71 | 34.26 |
| EER98969 | Sorghum | cytosol | 31.12 | 33.94 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 34.02 | 33.88 |
| PGSC0003DMT400075155 | Potato | nucleus | 29.88 | 33.49 |
| GSMUA_Achr11P... | Banana | cytosol | 31.95 | 33.19 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 31.12 | 33.19 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 29.88 | 33.03 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 28.22 | 32.54 |
| TraesCS5B01G211000.1 | Wheat | nucleus | 30.29 | 31.74 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 29.88 | 31.72 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 33.2 | 31.62 |
| PGSC0003DMT400007592 | Potato | nucleus | 33.2 | 31.5 |
| Solyc12g009220.1.1 | Tomato | nucleus | 32.78 | 31.35 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 29.46 | 30.87 |
| CDY37269 | Canola | nucleus | 30.71 | 30.83 |
| CDY46022 | Canola | nucleus | 29.88 | 30.0 |
| Bra008172.1-P | Field mustard | nucleus | 29.46 | 29.58 |
| CDX73127 | Canola | cytosol | 29.88 | 29.39 |
| CDY45408 | Canola | cytosol | 29.46 | 28.98 |
| AT1G74950.1 | Thale cress | cytosol | 29.88 | 28.92 |
| Bra015880.1-P | Field mustard | cytosol | 29.05 | 28.57 |
| CDX68156 | Canola | cytosol | 21.16 | 28.18 |
| Bra003778.1-P | Field mustard | cytosol | 25.73 | 27.93 |
| Os09t0439200-01 | Rice | plastid | 26.56 | 27.59 |
| CDY41023 | Canola | plastid | 29.05 | 27.56 |
| CDY26697 | Canola | plastid | 28.63 | 27.27 |
| CDX85865 | Canola | cytosol | 25.31 | 27.23 |
| Bra025713.1-P | Field mustard | plastid | 28.63 | 27.17 |
| AT1G19180.1 | Thale cress | cytosol | 27.39 | 26.09 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 28.63 | 25.75 |
| CDX73289 | Canola | cytosol | 19.92 | 25.53 |
| Bra016520.1-P | Field mustard | plastid | 27.39 | 25.48 |
| CDX96675 | Canola | plastid | 27.8 | 25.48 |
| CDX83781 | Canola | plastid | 27.39 | 25.0 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 35.68 | 24.36 |
| TraesCS5A01G212800.1 | Wheat | plastid | 29.88 | 24.32 |
| Bra031065.1-P | Field mustard | plastid | 27.39 | 24.18 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 29.05 | 23.73 |
| GSMUA_Achr7P15650_001 | Banana | plastid | 14.94 | 23.23 |
| GSMUA_Achr4P09660_001 | Banana | cytosol | 18.67 | 20.55 |
| GSMUA_Achr5P22010_001 | Banana | cytosol | 13.69 | 20.12 |
| GSMUA_Achr8P23800_001 | Banana | cytosol | 14.52 | 18.92 |
| GSMUA_Achr10P... | Banana | cytosol | 13.69 | 18.64 |
| GSMUA_Achr8P24590_001 | Banana | nucleus | 17.43 | 18.42 |
| CDX81917 | Canola | plastid | 27.8 | 13.19 |
| CDY21679 | Canola | plastid | 28.22 | 12.48 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P05170_001 | EnsemblPlants:GSMUA_Achr5T05170_001 | EnsemblPlantsGene:GSMUA_Achr5G05170_001 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF12 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SMART:SM00979 |
| UniParc:UPI0002953A95 | UniProt:M0SVU6 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : | : |
Description
Putative Protein TIFY 10B [Source:GMGC_GENE;Acc:GSMUA_Achr5G05170_001]
Coordinates
chr5:-:3831979..3833526
Molecular Weight (calculated)
26311.2 Da
IEP (calculated)
8.057
GRAVY (calculated)
-0.751
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQKMGSKG EKTNFSLACR LLSQYLKEKR GVGGLGLEMA PPKPLDQQAQ DQSRAPVTMS LLPGLDVPGD DRAENDHEKN PTKSMDLLPR LSGFDSCFLP
101: EEEESVKTAE TQKMEKSQLT IFYGGKVLVF DKFPADKAMD LMGMATNESM AAQSHSFSEP LTSTPGADSS SGKLKANTSD MPIPRRNSLR RFLEKRKDRV
201: NAKAPYQVDG SSEVKPECPG SDWLNLGRQV SQPQHSSASG K
101: EEEESVKTAE TQKMEKSQLT IFYGGKVLVF DKFPADKAMD LMGMATNESM AAQSHSFSEP LTSTPGADSS SGKLKANTSD MPIPRRNSLR RFLEKRKDRV
201: NAKAPYQVDG SSEVKPECPG SDWLNLGRQV SQPQHSSASG K
001: MSTGQAPEKS NFSQRCSLLS RYLKEKGSFG NINMGLARKS DLELAGKFDL KGQQNVIKKV ETSETRPFKL IQKFSIGEAS TSTEDKAIYI DLSEPAKVAP
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
101: ESGNSQLTIF FGGKVMVFNE FPEDKAKEIM EVAKEANHVA VDSKNSQSHM NLDKSNVVIP DLNEPTSSGN NEDQETGQQH QVVERIARRA SLHRFFAKRK
201: DRAVARAPYQ VNQHGSHLPP KPEMVAPSIK SGQSSQHIAT PPKPKAHNHM PMEVDKKEGQ SSKNLELKL
Arabidopsis Description
TIFY11BTIFY11B [Source:UniProtKB/TrEMBL;Acc:A0A178W2J3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.