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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra005000.1-P
Bra010178.1-P
Bra017044.1-P
Bra017045.1-P
Bra022254.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G74950.1 Bra010178.1-P AT1G32640.1 19309455
AT1G74950.1 Bra000156.1-P AT2G39940.1 18547396
AT1G74950.1 Bra005000.1-P AT2G39940.1 18547396
AT1G74950.1 Bra017044.1-P AT2G39940.1 18547396
AT1G74950.1 Bra017045.1-P AT2G39940.1 18547396
AT1G74950.1 Bra022254.1-P AT3G17860.1 19309455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46022 Canola nucleus 99.58 99.58
Bra015880.1-P Field mustard cytosol 64.58 63.27
AT1G74950.1 Thale cress cytosol 62.5 60.24
Bra003778.1-P Field mustard cytosol 48.75 52.7
Bra025713.1-P Field mustard plastid 51.67 48.82
Bra031065.1-P Field mustard plastid 53.33 46.89
Bra016520.1-P Field mustard plastid 50.42 46.72
VIT_11s0016g00710.t01 Wine grape cytosol, plastid 44.58 39.93
Solyc07g042170.2.1 Tomato cytosol 34.58 38.43
PGSC0003DMT400075155 Potato nucleus 33.75 37.67
GSMUA_Achr2P21770_001 Banana mitochondrion 32.92 35.75
Zm00001d022139_P001 Maize plastid 32.5 33.48
Solyc12g009220.1.1 Tomato nucleus 35.0 33.33
GSMUA_Achr6P31050_001 Banana cytosol 29.58 33.33
Zm00001d029448_P001 Maize cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 30.42 32.02
PGSC0003DMT400007592 Potato nucleus 33.75 31.89
EER97533 Sorghum plastid 30.83 31.49
GSMUA_Achr9P14370_001 Banana cytosol 34.17 30.94
TraesCS2D01G176800.1 Wheat plastid 29.58 30.74
TraesCS2B01G195600.1 Wheat plastid 29.58 30.74
GSMUA_Achr3P05920_001 Banana nucleus 32.08 30.68
HORVU2Hr1G031310.9 Barley cytosol, mitochondrion, plastid 30.42 30.54
GSMUA_Achr5P22110_001 Banana mitochondrion 31.25 30.36
Os03t0402800-01 Rice plastid 28.75 30.26
GSMUA_Achr7P19850_001 Banana cytosol 30.0 29.75
GSMUA_Achr5P05170_001 Banana cytosol, mitochondrion, nucleus 29.58 29.46
EER98969 Sorghum cytosol 27.08 29.41
TraesCS2A01G169300.1 Wheat plastid 27.92 29.0
GSMUA_Achr3P02140_001 Banana mitochondrion 25.0 28.71
Os07t0615200-01 Rice mitochondrion 29.17 28.69
EER92157 Sorghum plastid 27.08 28.51
TraesCS5D01G219300.2 Wheat nucleus 27.08 28.26
TraesCS5B01G211000.1 Wheat nucleus 27.08 28.26
GSMUA_Achr8P16780_001 Banana cytosol 29.58 28.06
GSMUA_AchrUn_... Banana nucleus 28.75 27.94
GSMUA_Achr3P10270_001 Banana cytosol 26.25 27.88
Zm00001d006860_P001 Maize plastid 30.83 27.82
GSMUA_Achr11P... Banana cytosol 26.67 27.59
GSMUA_Achr10P... Banana cytosol 18.33 27.16
Os09t0439200-01 Rice plastid 26.25 27.16
Zm00001d005813_P002 Maize cytosol, plastid 25.0 26.43
Zm00001d020614_P001 Maize cytosol, plastid 23.75 26.15
Bra016604.1-P Field mustard nucleus 27.5 24.44
Bra002338.1-P Field mustard cytosol 19.58 23.38
TraesCS5A01G212800.1 Wheat plastid 28.33 22.97
GSMUA_Achr1P21870_001 Banana mitochondrion 32.92 22.38
HORVU5Hr1G062290.6 Barley mitochondrion, plastid 27.5 22.37
Bra008033.1-P Field mustard nucleus 24.17 21.25
Bra020135.1-P Field mustard cytosol 19.17 20.81
Bra025977.1-P Field mustard nucleus 21.67 20.31
Bra030986.1-P Field mustard nucleus 25.0 20.07
Bra016056.1-P Field mustard nucleus 22.5 19.71
Protein Annotations
EnsemblPlants:Bra008172.1EnsemblPlants:Bra008172.1-PEnsemblPlantsGene:Bra008172InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_dom
PANTHER:PTHR33077PFAM:PF06200PFAM:PF09425PFscan:PS51320SEG:segSMART:SM00979
UniParc:UPI0002545969UniProt:M4CVC5MapMan:11.7.2.1.2MapMan:15.5.45::
Description
AT1G19180 (E=8e-062) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding
Coordinates
chrA02:-:13570792..13571993
Molecular Weight (calculated)
26198.9 Da
IEP (calculated)
9.597
GRAVY (calculated)
-0.559
Length
240 amino acids
Sequence
(BLAST)
001: MSSSAEYREF SGRKLQKKPS FSQTCSRLSR YLKEKGSFGD LSLGMTCNPD VTGVFAVSRQ PTMMNLFPCE EASPTQDVKP THKVPRQSSF SSSSSAGAKG
101: EVEKIIETKS VKVESQSAQL TIFYGGQVMV FDDFPAEKVK QVIDLANKGS DYAQNIAKNQ KEIASTTPNP VPSLAKTAAA PELVQTNTSS LACELPIARR
201: ASLHRFLEKR KDRITSKAPY QIDGSTEASS RPDTSWLGSQ
Best Arabidopsis Sequence Match ( AT1G74950.1 )
(BLAST)
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.