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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000652
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400002963
PGSC0003DMT400002985
PGSC0003DMT400002991
PGSC0003DMT400007592
PGSC0003DMT400018046
PGSC0003DMT400022650
PGSC0003DMT400022651
PGSC0003DMT400036790
PGSC0003DMT400045204
PGSC0003DMT400069515
PGSC0003DMT400074101
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19180.1 PGSC0003DMT400000652 AT1G01260.1 21798944
AT1G19180.1 PGSC0003DMT400018046 AT1G01260.1 21798944
AT1G19180.1 PGSC0003DMT400007592 AT1G19180.1 19309455
AT1G19180.1 PGSC0003DMT400075155 AT1G19180.1 19309455
AT1G19180.1 PGSC0003DMT400007592 AT1G19180.1 21798944
AT1G19180.1 PGSC0003DMT400075155 AT1G19180.1 21798944
AT1G19180.1 PGSC0003DMT400002985 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400002991 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400022650 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400022651 AT1G30135.1 19309455
AT1G19180.1 PGSC0003DMT400002963 AT1G32640.1 18547396
AT1G19180.1 PGSC0003DMT400045204 AT1G32640.1 18547396
AT1G19180.1 PGSC0003DMT400002963 AT1G32640.1 19309455
AT1G19180.1 PGSC0003DMT400045204 AT1G32640.1 19309455
AT1G19180.1 PGSC0003DMT400036790 AT1G48500.1 19309455
AT1G19180.1 PGSC0003DMT400074101 AT1G48500.1 19309455
AT1G19180.1 PGSC0003DMT400036790 AT3G17860.1 19309455
AT1G19180.1 PGSC0003DMT400074101 AT3G17860.1 19309455
AT1G19180.1 PGSC0003DMT400001474 AT5G24660.1 21798944
AT1G19180.1 PGSC0003DMT400001475 AT5G24660.1 21798944
AT1G19180.1 PGSC0003DMT400001476 AT5G24660.1 21798944
AT1G19180.1 PGSC0003DMT400069515 AT5G24660.1 21798944
AT1G74950.1 PGSC0003DMT400002963 AT1G32640.1 19309455
AT1G74950.1 PGSC0003DMT400045204 AT1G32640.1 19309455
AT1G74950.1 PGSC0003DMT400036790 AT3G17860.1 19309455
AT1G74950.1 PGSC0003DMT400074101 AT3G17860.1 19309455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g042170.2.1 Tomato cytosol 92.09 91.67
PGSC0003DMT400007592 Potato nucleus 49.77 42.13
AT1G19180.1 Thale cress cytosol 43.26 36.76
CDY37269 Canola nucleus 38.6 34.58
CDY46022 Canola nucleus 38.14 34.17
CDY26697 Canola plastid 40.0 33.99
Bra008172.1-P Field mustard nucleus 37.67 33.75
TraesCS2B01G195600.1 Wheat plastid 35.35 32.9
VIT_11s0016g00710.t01 Wine grape cytosol, plastid 40.93 32.84
Bra025713.1-P Field mustard plastid 38.6 32.68
CDY41023 Canola plastid 38.6 32.68
TraesCS2D01G176800.1 Wheat plastid 34.88 32.47
HORVU2Hr1G031310.9 Barley cytosol, mitochondrion, plastid 35.81 32.22
GSMUA_Achr2P21770_001 Banana mitochondrion 32.56 31.67
Bra016520.1-P Field mustard plastid 38.14 31.66
GSMUA_Achr3P05920_001 Banana nucleus 36.74 31.47
PGSC0003DMT400011155 Potato nucleus 28.84 31.0
EER98969 Sorghum cytosol 31.63 30.77
Os07t0615200-01 Rice mitochondrion 34.88 30.74
TraesCS2A01G169300.1 Wheat plastid 33.02 30.74
GSMUA_Achr9P14370_001 Banana cytosol 37.67 30.57
AT1G74950.1 Thale cress cytosol 35.35 30.52
GSMUA_Achr6P31050_001 Banana cytosol 30.23 30.52
CDX96675 Canola plastid 37.21 30.42
Bra031065.1-P Field mustard plastid 38.6 30.4
CDX83781 Canola plastid 37.21 30.3
GSMUA_Achr5P05170_001 Banana cytosol, mitochondrion, nucleus 33.49 29.88
EER97533 Sorghum plastid 32.56 29.79
GSMUA_Achr5P22110_001 Banana mitochondrion 33.95 29.55
GSMUA_AchrUn_... Banana nucleus 33.95 29.55
CDX85865 Canola cytosol 30.7 29.46
CDX73127 Canola cytosol 33.49 29.39
EER92157 Sorghum plastid 31.16 29.39
Os03t0402800-01 Rice plastid 31.16 29.39
Zm00001d020614_P001 Maize cytosol, plastid 29.77 29.36
GSMUA_Achr3P10270_001 Banana cytosol 30.7 29.2
Zm00001d029448_P001 Maize cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 30.7 28.95
Zm00001d005813_P002 Maize cytosol, plastid 30.23 28.63
Bra015880.1-P Field mustard cytosol 32.56 28.57
CDY45408 Canola cytosol 32.56 28.57
GSMUA_Achr10P... Banana cytosol 21.4 28.4
Zm00001d022139_P001 Maize plastid 30.7 28.33
GSMUA_Achr3P02140_001 Banana mitochondrion 27.44 28.23
GSMUA_Achr7P19850_001 Banana cytosol 31.63 28.1
Bra003778.1-P Field mustard cytosol 28.84 27.93
TraesCS5D01G219300.2 Wheat nucleus 29.77 27.83
CDX68156 Canola cytosol 23.26 27.62
TraesCS5B01G211000.1 Wheat nucleus 29.3 27.39
CDX73289 Canola cytosol 23.72 27.13
Os09t0439200-01 Rice plastid 28.84 26.72
GSMUA_Achr11P... Banana cytosol 28.84 26.72
Zm00001d006860_P001 Maize plastid 31.16 25.19
GSMUA_Achr8P16780_001 Banana cytosol 29.3 24.9
PGSC0003DMT400064125 Potato cytosol 10.7 24.73
PGSC0003DMT400058918 Potato nucleus 33.95 23.62
TraesCS5A01G212800.1 Wheat plastid 29.77 21.62
GSMUA_Achr1P21870_001 Banana mitochondrion 34.88 21.25
HORVU5Hr1G062290.6 Barley mitochondrion, plastid 28.37 20.68
CDX81917 Canola plastid 38.6 16.34
CDY21679 Canola plastid 38.14 15.05
Protein Annotations
EnsemblPlants:PGSC0003DMT400075155EnsemblPlantsGene:PGSC0003DMG400029237EntrezGene:102592910InterPro:CCT_CSInterPro:IPR010399InterPro:Tify_dom
PANTHER:PTHR33077PANTHER:PTHR33077:SF13PFAM:PF06200PFAM:PF09425PFscan:PS51320PGSC:PGSC0003DMG400029237
RefSeq:XP_006367890.1SEG:segSMART:SM00979UniParc:UPI000296019BUniProt:M1CUQ3MapMan:11.7.2.1.2
MapMan:15.5.45:::::
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400029237]
Coordinates
chr00:-:30740775..30741912
Molecular Weight (calculated)
23906.5 Da
IEP (calculated)
9.303
GRAVY (calculated)
-0.591
Length
215 amino acids
Sequence
(BLAST)
001: MASSEIVDSG RHAGQKSHFS HTCNLLSQYL KEKKGSLGDL SLDIHRNFDS TGSTTMDLLP MIEKSGESVQ KSMNLFRQGA MKAESEPEKA QMTIFYAGQV
101: IVFNDFPADK AKEIMLMAST SKGNNTHKQL ESGADLVVPS FGKTSIQENQ MPNQPIVSDL PIARRASLTR FLEKRKDRLT AKVPYYREEA APKKEENKAA
201: WLGLGGQFAV KTEQY
Best Arabidopsis Sequence Match ( AT1G19180.3 )
(BLAST)
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.