Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G195600.1 | Wheat | plastid | 95.67 | 95.67 |
| TraesCS2A01G169300.1 | Wheat | plastid | 77.92 | 77.92 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 78.79 | 76.15 |
| Os07t0615200-01 | Rice | mitochondrion | 60.17 | 56.97 |
| Zm00001d022139_P001 | Maize | plastid | 55.41 | 54.94 |
| EER97533 | Sorghum | plastid | 55.84 | 54.89 |
| Zm00001d006860_P001 | Maize | plastid | 51.08 | 44.36 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 35.5 | 37.1 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 32.47 | 35.89 |
| Solyc07g042170.2.1 | Tomato | cytosol | 33.33 | 35.65 |
| PGSC0003DMT400075155 | Potato | nucleus | 32.47 | 34.88 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 32.47 | 32.61 |
| GSMUA_Achr11P... | Banana | cytosol | 32.47 | 32.33 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 35.06 | 32.02 |
| CDY46022 | Canola | nucleus | 31.17 | 30.0 |
| Bra008172.1-P | Field mustard | nucleus | 30.74 | 29.58 |
| CDX68156 | Canola | cytosol | 22.94 | 29.28 |
| CDY37269 | Canola | nucleus | 30.3 | 29.17 |
| Solyc12g009220.1.1 | Tomato | nucleus | 31.6 | 28.97 |
| PGSC0003DMT400007592 | Potato | nucleus | 31.6 | 28.74 |
| CDX73289 | Canola | cytosol | 23.38 | 28.72 |
| CDX73127 | Canola | cytosol | 30.3 | 28.57 |
| CDY26697 | Canola | plastid | 31.17 | 28.46 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 32.9 | 28.36 |
| CDY41023 | Canola | plastid | 31.17 | 28.35 |
| CDY45408 | Canola | cytosol | 29.87 | 28.16 |
| Bra015880.1-P | Field mustard | cytosol | 29.87 | 28.16 |
| CDX85865 | Canola | cytosol | 27.27 | 28.12 |
| AT1G19180.1 | Thale cress | cytosol | 30.74 | 28.06 |
| Bra025713.1-P | Field mustard | plastid | 30.74 | 27.95 |
| CDX96675 | Canola | plastid | 31.6 | 27.76 |
| Bra003778.1-P | Field mustard | cytosol | 25.97 | 27.03 |
| Bra016520.1-P | Field mustard | plastid | 30.3 | 27.03 |
| CDX83781 | Canola | plastid | 30.74 | 26.89 |
| Bra031065.1-P | Field mustard | plastid | 31.17 | 26.37 |
| AT1G74950.1 | Thale cress | cytosol | 27.71 | 25.7 |
| TraesCS2D01G507200.1 | Wheat | nucleus | 21.64 | 24.15 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 35.06 | 22.95 |
| CDX81917 | Canola | plastid | 31.17 | 14.17 |
| CDY21679 | Canola | plastid | 32.9 | 13.95 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G176800.1 | EnsemblPlantsGene:TraesCS2D01G176800 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF19 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:11.7.2.1.2 | MapMan:15.5.45 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:120254758..120256402
Molecular Weight (calculated)
24275.7 Da
IEP (calculated)
9.418
GRAVY (calculated)
-0.491
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASARQGEM ATSFAMACSL LSRYVRQNGA AAAELGLGIN KGEAEAQRAA DTKSPLPGAE GEEAGRKKET MELFPQSAGL QDAAAPDATR EEDKSQLTIF
101: YGGKVLVFND FPADKAKGLM QLAGKGSPVV QNVSATTTAA DTDKVQTAVL APASSLPTGP VDAPKPARPN ASDLPIARKA SLHRFLEKRK DRLHAKAPYQ
201: APPSDATPVK KEFENQPWLG LGPNAALKPN Q
101: YGGKVLVFND FPADKAKGLM QLAGKGSPVV QNVSATTTAA DTDKVQTAVL APASSLPTGP VDAPKPARPN ASDLPIARKA SLHRFLEKRK DRLHAKAPYQ
201: APPSDATPVK KEFENQPWLG LGPNAALKPN Q
001: MSSSMECSEF VGSRRFTGKK PSFSQTCSRL SQYLKENGSF GDLSLGMACK PDVNGTLGNS RQPTTTMSLF PCEASNMDSM VQDVKPTNLF PRQPSFSSSS
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
101: SSLPKEDVLK MTQTTRSVKP ESQTAPLTIF YAGQVIVFND FSAEKAKEVI NLASKGTANS LAKNQTDIRS NIATIANQVP HPRKTTTQEP IQSSPTPLTE
201: LPIARRASLH RFLEKRKDRV TSKAPYQLCD PAKASSNPQT TGNMSWLGLA AEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.