Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G364700.1 | Wheat | nucleus | 88.1 | 87.85 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 72.52 | 72.11 |
| HORVU4Hr1G087520.3 | Barley | plastid | 50.99 | 52.02 |
| TraesCSU01G139000.1 | Wheat | nucleus | 48.44 | 47.5 |
| Os08t0428400-01 | Rice | nucleus | 36.54 | 30.21 |
| EES15016 | Sorghum | cytosol | 33.14 | 27.34 |
| Zm00001d050365_P006 | Maize | nucleus | 29.75 | 23.97 |
| CDX95570 | Canola | plastid | 9.92 | 23.33 |
| PGSC0003DMT400074101 | Potato | nucleus | 16.71 | 23.32 |
| Solyc03g118540.2.1 | Tomato | cytosol | 20.68 | 22.39 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 25.21 | 21.71 |
| Bra007937.1-P | Field mustard | nucleus | 15.3 | 21.6 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.31 | 21.36 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.16 | 20.33 |
| Bra016193.1-P | Field mustard | nucleus | 14.16 | 20.08 |
| Solyc01g005440.2.1 | Tomato | cytosol | 17.56 | 20.06 |
| KRH38274 | Soybean | cytosol | 18.13 | 20.06 |
| PGSC0003DMT400081778 | Potato | cytosol | 18.98 | 19.82 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 23.23 | 19.76 |
| PGSC0003DMT400036790 | Potato | cytosol | 21.81 | 19.74 |
| AT1G70700.3 | Thale cress | cytosol | 15.3 | 19.57 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 22.1 | 19.02 |
| Bra022254.1-P | Field mustard | nucleus | 17.28 | 18.21 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 19.26 | 17.71 |
| KRH41663 | Soybean | cytosol | 18.41 | 17.62 |
| AT1G48500.1 | Thale cress | nucleus | 15.3 | 17.42 |
| KRH60357 | Soybean | nucleus | 17.85 | 16.98 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 18.7 | 16.67 |
| Bra021281.1-P | Field mustard | nucleus | 16.43 | 16.43 |
| AT3G17860.1 | Thale cress | nucleus | 16.15 | 16.19 |
| KRH39044 | Soybean | nucleus | 17.56 | 16.06 |
Protein Annotations
| EnsemblPlants:TraesCSU01G139100.1 | EnsemblPlantsGene:TraesCSU01G139100 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:126983786..126985491
Molecular Weight (calculated)
37670.4 Da
IEP (calculated)
11.147
GRAVY (calculated)
-0.516
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIRSSHHPE EATGSLMRPG SDYPPGLLQR GGAAAAAAHR RQFQPIPAPF MSFRPPLADT PAPHHQGQLR FHGHGGPRPY HRPQPPPGSN PGAADGAAST
101: TQQRFTANSA VYRSAVGVYA PSRRIWNPKS TLMTMFYNGA VNVFDVPVDK AQEIMVLASR ASVSTPPRPT EIQKSGSHVP ANTRFAVPDP RKAFATNVST
201: ISSRIPAVPQ APTHSRSAPS GYQNYTPAPT TSSVAPSSVV PPVSRASSAQ RPMQQASSVA VAEPIRPIAV RQSRKASLAR FLEKRKERVS SATPYQLSKS
301: PLESSGSLGS ASTPSRLSSA DNAPPNNNCQ ESMSYVSNDA MLAIPHRVVI ELE
101: TQQRFTANSA VYRSAVGVYA PSRRIWNPKS TLMTMFYNGA VNVFDVPVDK AQEIMVLASR ASVSTPPRPT EIQKSGSHVP ANTRFAVPDP RKAFATNVST
201: ISSRIPAVPQ APTHSRSAPS GYQNYTPAPT TSSVAPSSVV PPVSRASSAQ RPMQQASSVA VAEPIRPIAV RQSRKASLAR FLEKRKERVS SATPYQLSKS
301: PLESSGSLGS ASTPSRLSSA DNAPPNNNCQ ESMSYVSNDA MLAIPHRVVI ELE
001: MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS MSMPGFQSHH YAPGGRSFMN
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.