Factsheet for VIT_01s0011g05560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60357	Soybean	nucleus	57.55	59.57
KRH41663	Soybean	cytosol	51.56	53.66
KRH38274	Soybean	cytosol	44.53	53.6
PGSC0003DMT400081778	Potato	cytosol	43.75	49.7
Solyc01g005440.2.1	Tomato	cytosol	39.84	49.51
VIT_17s0000g02230.t01	Wine grape	nucleus	37.5	36.36
GSMUA_Achr7P12530_001	Banana	nucleus	33.33	31.22
GSMUA_Achr9P15630_001	Banana	cytosol	33.33	31.22
GSMUA_Achr5P05900_001	Banana	nucleus	33.07	30.6
EER98873	Sorghum	nucleus	27.6	25.98
TraesCS5A01G204900.1	Wheat	nucleus	26.56	24.94
TraesCS5B01G203400.2	Wheat	nucleus	26.82	24.76
Zm00001d020409_P002	Maize	nucleus	26.3	24.46
TraesCS5D01G211200.2	Wheat	nucleus	26.3	24.16
Os08t0428400-01	Rice	nucleus	25.78	23.18
HORVU5Hr1G060730.3	Barley	plastid	25.78	23.08
TraesCS5A01G533100.1	Wheat	nucleus	17.45	22.19
Zm00001d050365_P006	Maize	nucleus	24.22	21.23
Zm00001d032009_P001	Maize	plastid	7.29	20.9
EES15016	Sorghum	cytosol	22.92	20.56
HORVU4Hr1G087520.3	Barley	plastid	18.23	20.23
TraesCSU01G139100.1	Wheat	nucleus	17.71	19.26
TraesCS4B01G364700.1	Wheat	nucleus	17.45	18.93
TraesCS5A01G533000.1	Wheat	nucleus	17.19	18.59
TraesCSU01G139000.1	Wheat	nucleus	16.41	17.5
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	23.18	16.51

Protein Annotations

EntrezGene:100262965	wikigene:100262965	MapMan:15.5.45	ProteinID:CBI26848	ProteinID:CBI26848.3	InterPro:CCT_CS
UniProt:D7T8M7	EMBL:FN595752	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EntrezGene:LOC100262965	wikigene:LOC100262965
PFAM:PF06200	PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF37	SMART:SM00979
TIGR:TC52381	InterPro:Tify_dom	UniParc:UPI0001BE2DF4	ArrayExpress:VIT_01s0011g05560	EnsemblPlantsGene:VIT_01s0011g05560	EnsemblPlants:VIT_01s0011g05560.t01
unigene:Vvi.24528	RefSeq:XP_002284855	RefSeq:XP_002284855.1	RefSeq:XP_010653106.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:5284036..5288161

Molecular Weight (calculated)

39925.5 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.221

Length

384 amino acids

Sequence
(BLAST)

001: MERDFMGLSS KEPLAVVKEE IIEGAFTKGS GIQWPFSNKI SALPHFMSFK TAQEDKSKKV ASDSLVTSGF DPSNKCPAGE MQKAVNPDRQ GGSFAVTAYP
101: VQHDSHLMNH HPHDVKMFPV SNQTISVSMG NPFFKTHFAA AGQNMVGAAL KQQLLGGIPV SAPHGILPSA GSFAGITEPW NNFKTSGSPS QLTIFYAGTV
201: NVYDDISPEK AQAIMFLAGN GASMASRMGQ PRAQVQTPAS KLAAGDGVLA NQPMNISPCS GLSSPISVSS HPVAQSGSGS TSTEEVLAAK TTGVSATPVT
301: KLDSPKMLSV AATPMMPSAV PQARKASLAR FLEKRKERVM STAPYNISKK SPECATPGSN GMSYTASSGA GASAGAGALS ANKE

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.