CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60357	Soybean	nucleus	78.05	77.63
KRH38274	Soybean	cytosol	50.41	58.31
VIT_01s0011g05560.t01	Wine grape	cytosol	53.66	51.56
Solyc01g005440.2.1	Tomato	cytosol	34.42	41.1
PGSC0003DMT400081778	Potato	cytosol	37.4	40.83
KRH39044	Soybean	nucleus	32.52	31.09
GSMUA_Achr9P15630_001	Banana	cytosol	31.44	28.29
GSMUA_Achr7P12530_001	Banana	nucleus	29.27	26.34
GSMUA_Achr5P05900_001	Banana	nucleus	29.27	26.02
EER98873	Sorghum	nucleus	24.93	22.55
Zm00001d032009_P001	Maize	plastid	8.13	22.39
Zm00001d020409_P002	Maize	nucleus	24.93	22.28
Os08t0428400-01	Rice	nucleus	25.75	22.25
TraesCS5D01G211200.2	Wheat	nucleus	24.66	21.77
TraesCS5A01G204900.1	Wheat	nucleus	24.12	21.76
TraesCS5B01G203400.2	Wheat	nucleus	24.12	21.39
HORVU5Hr1G060730.3	Barley	plastid	23.85	20.51
EES15016	Sorghum	cytosol	22.76	19.63
TraesCS5A01G533100.1	Wheat	nucleus	15.99	19.54
Zm00001d050365_P006	Maize	nucleus	22.49	18.95
TraesCSU01G139100.1	Wheat	nucleus	17.62	18.41
TraesCSU01G139000.1	Wheat	nucleus	17.34	17.78
TraesCS4B01G364700.1	Wheat	nucleus	16.53	17.23
TraesCS5A01G533000.1	Wheat	nucleus	16.53	17.18
HORVU4Hr1G087520.3	Barley	plastid	15.99	17.05
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	22.49	15.4

Protein Annotations

MapMan:15.5.45	EMBL:ACUP02004777	InterPro:CCT_CS	EnsemblPlantsGene:GLYMA_08G043000	GO:GO:0003674	GO:GO:0003714
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611
GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	UniProt:I1KQ77
InterPro:IPR010399	EnsemblPlants:KRH41663	ProteinID:KRH41663	ProteinID:KRH41663.1	PFAM:PF06200	PFAM:PF09425
PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF37	SMART:SM00979	InterPro:Tify_dom	UniParc:UPI00023C64D8
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:3399575..3402598

Molecular Weight (calculated)

39390.2 Da

IEP (calculated)

9.339

GRAVY (calculated)

-0.118

Length

369 amino acids

Sequence
(BLAST)

001: MERDFMGLNS KEPLAVVKEE MHVYGFEDSG FTKGRIAQWP FSNKVSALPH LMSFKASQDD KTKKIVSDPL TSAGFMSILS QEAFDSSQKR CAGEPQKSFN
101: HDGQGRLHFS LTPYPVQHDV NSVNRPHDVK MLSVPNQAIS LSLGNPFLKN DFATAGQKLL LGGIPVTTPH SVLPSAVAVA GMTESCNTVK PSAPSAQLTI
201: FYAGTVNVFD DISAEKAQAI MLLAGNSLSA GSNMAQPKVQ VLVSKLAVGD GVPVSQPANT SPGSGLSSPL SVSSHTGIQS GSGSTSTDKT TGVPTTPVCN
301: VEPPKIVSAT TMLTSAVPQA RKASLARFLE KRKERLVWMQ YFSGWVLSDT IYISPKKEGV VVIIHWLTT

Best Arabidopsis Sequence Match ( AT3G17860.1 )
(BLAST)

001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.