Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G533000.1 | Wheat | nucleus | 49.67 | 42.25 |
| TraesCSU01G139000.1 | Wheat | nucleus | 46.03 | 38.61 |
| Os08t0428400-01 | Rice | nucleus | 34.11 | 24.12 |
| CDX95570 | Canola | plastid | 11.26 | 22.67 |
| EES15016 | Sorghum | cytosol | 30.79 | 21.73 |
| Zm00001d050365_P006 | Maize | nucleus | 30.13 | 20.78 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 26.49 | 19.56 |
| Solyc01g005440.2.1 | Tomato | cytosol | 19.87 | 19.42 |
| PGSC0003DMT400081778 | Potato | cytosol | 20.86 | 18.64 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 25.5 | 18.55 |
| Solyc03g118540.2.1 | Tomato | cytosol | 19.87 | 18.4 |
| Bra007937.1-P | Field mustard | nucleus | 15.23 | 18.4 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.9 | 18.29 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.24 | 18.18 |
| KRH38274 | Soybean | cytosol | 18.87 | 17.87 |
| Bra016193.1-P | Field mustard | nucleus | 14.57 | 17.67 |
| KRH60357 | Soybean | nucleus | 21.52 | 17.52 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 22.19 | 17.45 |
| PGSC0003DMT400074101 | Potato | nucleus | 14.57 | 17.39 |
| Bra022254.1-P | Field mustard | nucleus | 19.21 | 17.31 |
| AT1G70700.3 | Thale cress | cytosol | 15.56 | 17.03 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 22.85 | 16.83 |
| AT1G48500.1 | Thale cress | nucleus | 17.22 | 16.77 |
| PGSC0003DMT400036790 | Potato | cytosol | 21.52 | 16.67 |
| Bra021281.1-P | Field mustard | nucleus | 19.21 | 16.43 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 22.19 | 16.34 |
| KRH41663 | Soybean | cytosol | 19.54 | 15.99 |
| AT3G17860.1 | Thale cress | nucleus | 17.88 | 15.34 |
| KRH39044 | Soybean | nucleus | 19.21 | 15.03 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 17.55 | 13.38 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G533100.1 | EnsemblPlantsGene:TraesCS5A01G533100 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF14 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:15.5.45 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:690443624..690444997
Molecular Weight (calculated)
32086.0 Da
IEP (calculated)
10.597
GRAVY (calculated)
-0.443
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEIGSNDC EEEEEDTGNG NPMKPGTLLH SAYPPPPGLL RRGAPVTHRR QSQQAIPAPF MSSGPPTADT PMPHHQGQLG MFHGQHGGSR PLFCPPGSYP
101: SAADAIASRN QQRFTANSAV YAPSRRIWNP NSTLMTMFYN GAVNMFDVPV DKAREIMVLA SRTSVSDNAA RVPVPEPRHV SVISSPIPAV SQAPTISKRI
201: PGYQNYTPAP TTSSGVPSSV VPPPSQASSA QRMQQASPAV AAAIKPIAVH QSRKASLARF LEKRKERVSS VTPYPLSKSP LVSSGTFGSA STPSRLSSAK
301: SL
101: SAADAIASRN QQRFTANSAV YAPSRRIWNP NSTLMTMFYN GAVNMFDVPV DKAREIMVLA SRTSVSDNAA RVPVPEPRHV SVISSPIPAV SQAPTISKRI
201: PGYQNYTPAP TTSSGVPSSV VPPPSQASSA QRMQQASPAV AAAIKPIAVH QSRKASLARF LEKRKERVSS VTPYPLSKSP LVSSGTFGSA STPSRLSSAK
301: SL
001: MERDFLGLGS KLSPITVKEE TNEDSAPSRG MMDWSFSSKV GSGPQFLSFG TSQQETRVNT VNDHLLSSAA MDQNQRTYFS SLQEDRVFPG SSQQDQTTIT
101: VSMSEPNYIN SFINHQHLGG SPIMAPPVSV FPAPTTIRSS SKPLPPQLTI FYAGSVLVYQ DIAPEKAQAI MLLAGNGPHA KPVSQPKPQK LVHHSLPTTD
201: PPTMPPSFLP SISYIVSETR SSGSNGVTGL GPTKTKASLA STRNNQTAAF SMAPTVGLPQ TRKASLARFL EKRKERVINV SPYYVDNKSS IDCRTLMSEC
301: VSCPPAHHLH
101: VSMSEPNYIN SFINHQHLGG SPIMAPPVSV FPAPTTIRSS SKPLPPQLTI FYAGSVLVYQ DIAPEKAQAI MLLAGNGPHA KPVSQPKPQK LVHHSLPTTD
201: PPTMPPSFLP SISYIVSETR SSGSNGVTGL GPTKTKASLA STRNNQTAAF SMAPTVGLPQ TRKASLARFL EKRKERVINV SPYYVDNKSS IDCRTLMSEC
301: VSCPPAHHLH
Arabidopsis Description
TIFY6AProtein TIFY 6A [Source:UniProtKB/Swiss-Prot;Acc:Q58G47]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.