Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- mitochondrion 2
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G169900.1 | Wheat | nucleus | 95.99 | 97.43 |
| TraesCS6D01G159700.1 | Wheat | nucleus | 95.36 | 96.79 |
| HORVU6Hr1G034720.1 | Barley | nucleus | 89.45 | 93.19 |
| Os02t0192100-01 | Rice | mitochondrion | 39.66 | 75.2 |
| EES06432 | Sorghum | mitochondrion | 68.57 | 65.13 |
| GSMUA_Achr1P19060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 43.67 | 47.81 |
| VIT_14s0083g00450.t01 | Wine grape | mitochondrion | 42.62 | 46.65 |
| GSMUA_Achr1P15680_001 | Banana | endoplasmic reticulum, plasma membrane | 22.57 | 44.96 |
| CDY12623 | Canola | nucleus | 28.27 | 42.27 |
| Bra034018.1-P | Field mustard | nucleus | 27.0 | 41.83 |
| Bra004207.1-P | Field mustard | nucleus | 30.17 | 41.57 |
| CDX96108 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.17 | 41.57 |
| CDY01786 | Canola | cytosol | 30.38 | 41.38 |
| AT1G67170.1 | Thale cress | nucleus | 31.01 | 40.95 |
| KRH01477 | Soybean | nucleus | 34.6 | 40.59 |
| Solyc02g065630.2.1 | Tomato | nucleus | 37.34 | 40.05 |
| PGSC0003DMT400068308 | Potato | plastid | 37.97 | 39.82 |
| CDY54119 | Canola | mitochondrion | 24.26 | 31.51 |
| TraesCS3B01G591900.1 | Wheat | nucleus | 15.4 | 27.34 |
| TraesCS3B01G593200.1 | Wheat | nucleus | 15.4 | 27.34 |
| TraesCS1B01G180300.1 | Wheat | nucleus | 15.19 | 27.17 |
| TraesCS1B01G246000.1 | Wheat | nucleus | 14.77 | 26.42 |
| TraesCS2B01G249600.3 | Wheat | plastid | 18.78 | 23.99 |
| TraesCS6B01G381000.1 | Wheat | mitochondrion | 22.36 | 22.94 |
| TraesCS5B01G113500.2 | Wheat | nucleus | 15.4 | 22.46 |
| TraesCS5B01G486200.1 | Wheat | cytosol, mitochondrion, nucleus | 15.82 | 22.26 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G198100.1 | EnsemblPlantsGene:TraesCS6B01G198100 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF5 | SEG:seg |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:237100304..237103963
Molecular Weight (calculated)
50099.1 Da
IEP (calculated)
8.334
GRAVY (calculated)
-0.801
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSKGRMPPP YHHRPLPGPG SGPPHGMMHR DPYGPGMHPP PGPGPYPYDM LPPPEILEQK LAAQCGEIQK LALENERLAA SHASLRKELA AAQQELQRIQ
101: AQGEAAKAAE EQEMRGLLDK AAKMEADLKS YESVKADLQQ AHAEAQNLAA ARQHLLADAQ KLNKDLQRNF GEAQQLPALM ADLDAARQEY QHLRAAYEYE
201: RKLKMDHSES LQGMKKNYDS MVTELEKLRA ELTNTTNVDR SGTLYNPNFA QKDGGTSSHH SAYDGGYGGA QARTPPGMPD PLSGSPAGTA PRSGYDPSRG
301: NAYETSRLAR VHDASRGATG YDSLKVAGYD TSRMPALGGQ AAAPTAHGSS AGYYGSSQVT PPSHARAPGA APTYGSAQVP PSYASGPVPS SSYGATTARP
401: HGSAQGLPSY GQTQAPSYAH TQMPPSYGLA QASSHFAPTQ GGSPYGLSAQ PQGYGSAQAA PNTSGAYQAP HGRR
101: AQGEAAKAAE EQEMRGLLDK AAKMEADLKS YESVKADLQQ AHAEAQNLAA ARQHLLADAQ KLNKDLQRNF GEAQQLPALM ADLDAARQEY QHLRAAYEYE
201: RKLKMDHSES LQGMKKNYDS MVTELEKLRA ELTNTTNVDR SGTLYNPNFA QKDGGTSSHH SAYDGGYGGA QARTPPGMPD PLSGSPAGTA PRSGYDPSRG
301: NAYETSRLAR VHDASRGATG YDSLKVAGYD TSRMPALGGQ AAAPTAHGSS AGYYGSSQVT PPSHARAPGA APTYGSAQVP PSYASGPVPS SSYGATTARP
401: HGSAQGLPSY GQTQAPSYAH TQMPPSYGLA QASSHFAPTQ GGSPYGLSAQ PQGYGSAQAA PNTSGAYQAP HGRR
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
Arabidopsis Description
FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.