Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0192100-01 | Rice | mitochondrion | 40.34 | 38.4 |
| GSMUA_Achr1P19060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 57.14 | 31.41 |
| Bra034018.1-P | Field mustard | nucleus | 39.92 | 31.05 |
| CDY12623 | Canola | nucleus | 40.34 | 30.28 |
| VIT_14s0083g00450.t01 | Wine grape | mitochondrion | 55.04 | 30.25 |
| AT1G67170.1 | Thale cress | nucleus | 42.44 | 28.13 |
| Bra004207.1-P | Field mustard | nucleus | 40.34 | 27.91 |
| CDX96108 | Canola | cytosol, mitochondrion, nucleus, plastid | 40.34 | 27.91 |
| CDY01786 | Canola | cytosol | 39.5 | 27.01 |
| CDY54119 | Canola | mitochondrion | 36.55 | 23.84 |
| HORVU6Hr1G034720.1 | Barley | nucleus | 44.54 | 23.3 |
| KRH01477 | Soybean | nucleus | 39.08 | 23.02 |
| TraesCS6B01G198100.1 | Wheat | extracellular, mitochondrion, nucleus, plastid | 44.96 | 22.57 |
| TraesCS6D01G159700.1 | Wheat | nucleus | 44.12 | 22.48 |
| TraesCS6A01G169900.1 | Wheat | nucleus | 43.7 | 22.27 |
| Solyc02g065630.2.1 | Tomato | nucleus | 39.92 | 21.49 |
| GSMUA_Achr6P28060_001 | Banana | mitochondrion | 28.15 | 21.07 |
| PGSC0003DMT400068308 | Potato | plastid | 39.92 | 21.02 |
| GSMUA_Achr8P21750_001 | Banana | nucleus | 23.95 | 20.36 |
| EES06432 | Sorghum | mitochondrion | 42.44 | 20.24 |
| GSMUA_Achr8P23090_001 | Banana | cytosol | 24.79 | 17.2 |
| GSMUA_Achr10P... | Banana | cytosol | 21.85 | 16.99 |
| GSMUA_Achr10P... | Banana | mitochondrion | 20.59 | 16.33 |
| GSMUA_Achr9P19990_001 | Banana | cytosol | 12.61 | 16.04 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P15680_001 | EnsemblPlants:GSMUA_Achr1T15680_001 | EnsemblPlantsGene:GSMUA_Achr1G15680_001 | ncoils:Coil | PANTHER:PTHR33405 | PANTHER:PTHR33405:SF5 |
| UniParc:UPI000294B57A | UniProt:M0S076 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G15680_001]
Coordinates
chr1:-:11748055..11748771
Molecular Weight (calculated)
27161.2 Da
IEP (calculated)
6.719
GRAVY (calculated)
-0.179
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFFNFFYTY DHYVWNSSVI LSMFHVMLIE LCTSLHKVYH IVKGDIVPII MGSKSCIPPP LHLQRPLIGP GLVQPDPFGP GILLPPGVFP FDKLPPPEIM
101: AQKLAAQHVE MQRLAIENKR CAATHYSLRK ELSAAQQELQ RLQTDMSAIR ADQEQQLRML LDNISKMDSE LKASEPVNVD MQQARPEAQS LVAARQELIS
201: RVQQLTEDLQ RSHGNVQQIP SLMLELAALR QEYQDFRS
101: AQKLAAQHVE MQRLAIENKR CAATHYSLRK ELSAAQQELQ RLQTDMSAIR ADQEQQLRML LDNISKMDSE LKASEPVNVD MQQARPEAQS LVAARQELIS
201: RVQQLTEDLQ RSHGNVQQIP SLMLELAALR QEYQDFRS
001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR
Arabidopsis Description
FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.