Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P08320_001 | Banana | nucleus | 27.27 | 31.63 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.37 | 31.5 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 37.74 | 31.07 |
| PGSC0003DMT400067114 | Potato | nucleus | 34.16 | 29.04 |
| KRH52520 | Soybean | cytosol, plastid | 32.23 | 28.33 |
| KRH61848 | Soybean | cytosol, plastid | 32.23 | 28.19 |
| Solyc06g065650.2.1 | Tomato | nucleus | 33.06 | 28.1 |
| Bra011357.1-P | Field mustard | nucleus | 25.9 | 27.33 |
| CDX75256 | Canola | nucleus | 25.9 | 27.25 |
| CDX68863 | Canola | nucleus | 25.34 | 26.74 |
| CDY23332 | Canola | nucleus | 25.62 | 26.12 |
| Bra040086.1-P | Field mustard | nucleus | 25.62 | 26.05 |
| CDY51673 | Canola | nucleus | 25.62 | 25.98 |
| AT4G32570.1 | Thale cress | nucleus | 25.34 | 25.48 |
| KRH05071 | Soybean | nucleus | 26.45 | 25.33 |
| CDY30950 | Canola | nucleus | 12.67 | 19.66 |
| CDX83601 | Canola | mitochondrion | 10.47 | 13.01 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P01670_001 | EnsemblPlants:GSMUA_Achr6T01670_001 | EnsemblPlantsGene:GSMUA_Achr6G01670_001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF8 | PFAM:PF06200 | PFscan:PS51320 | SEG:seg | SMART:SM00979 | UniParc:UPI0002963DD2 |
| UniProt:M0T3B5 | MapMan:15.5.45 | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr6G01670_001]
Coordinates
chr6:-:1081662..1084705
Molecular Weight (calculated)
38321.8 Da
IEP (calculated)
7.243
GRAVY (calculated)
-0.477
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGDESSPVF HDFLGMSYGG GSLPAARWTK GTGIRRLPGE AEASGSASAS VGVSSIGHRL ISGSVDLGSE MQGVSNSEVS QHDGTEIAPS GLELGNTTGR
101: KRNHFDSSYM GPMKDAVLPM GSGSLESSNA TKMLGKEVIN EQLGRANDVE MMSSMQPPIR PTKQIVHQTS HYGIGMYWDN IPSYACKYST LGGAIISQSA
201: ADEGSRTGIR GSGVMNVLGH NRSSQTTEPK SYYHVPRNRA TACVSRQMTI FYAGQAHVFD DVHPNKADAI MALAGSSGGS WSTTYSTAMN KAKVLGRDDT
301: QKENVLLSNG GDRNHLLGQV THTPVADPLS GHTSADHRGG VATRDASLMA RAAEPNTEGK WMS
101: KRNHFDSSYM GPMKDAVLPM GSGSLESSNA TKMLGKEVIN EQLGRANDVE MMSSMQPPIR PTKQIVHQTS HYGIGMYWDN IPSYACKYST LGGAIISQSA
201: ADEGSRTGIR GSGVMNVLGH NRSSQTTEPK SYYHVPRNRA TACVSRQMTI FYAGQAHVFD DVHPNKADAI MALAGSSGGS WSTTYSTAMN KAKVLGRDDT
301: QKENVLLSNG GDRNHLLGQV THTPVADPLS GHTSADHRGG VATRDASLMA RAAEPNTEGK WMS
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.