Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 78.07 | 78.07 |
| Bra040570.1-P | Field mustard | nucleus | 71.93 | 71.93 |
| CDY42543 | Canola | nucleus | 71.93 | 71.93 |
| CDY72355 | Canola | nucleus | 71.93 | 71.93 |
| AT3G16980.1 | Thale cress | nucleus | 71.05 | 71.05 |
| Bra033550.1-P | Field mustard | nucleus | 70.18 | 70.18 |
| GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 69.3 | 68.7 |
| CDX99562 | Canola | nucleus | 63.16 | 64.86 |
| GSMUA_Achr7P05620_001 | Banana | nucleus | 62.28 | 62.28 |
| OQU90254 | Sorghum | nucleus | 62.28 | 62.28 |
| CDX86852 | Canola | nucleus | 66.67 | 58.02 |
| TraesCS2B01G195100.1 | Wheat | nucleus | 57.89 | 57.89 |
| Os07t0615800-00 | Rice | nucleus | 58.77 | 57.76 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 56.14 | 56.14 |
| TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 56.14 | 56.14 |
| AT4G16265.2 | Thale cress | extracellular | 64.04 | 54.89 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 33.33 | 52.78 |
| CDY32231 | Canola | cytosol, nucleus, plastid | 49.12 | 48.7 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 20.18 | 46.94 |
| Zm00001d022141_P007 | Maize | nucleus | 62.28 | 36.6 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 35.09 | 34.19 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006379 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 |
| EnsemblPlantsGene:GSMUA_Achr4G24050_001 | EnsemblPlants:GSMUA_Achr4P24050_001 | EnsemblPlants:GSMUA_Achr4T24050_001 | InterPro:IPR001222 | UniProt:M0SRL6 | PFAM:PF01096 |
| PFAM:PF02150 | PIRSF:PIRSF005586 | ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 |
| InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI00029519B4 | InterPro:Zn_ribbon_RPB9_C |
| InterPro:Znf_TFIIS | : | : | : | : | : |
Description
DNA-directed RNA polymerase II subunit RPB9 [Source:GMGC_GENE;Acc:GSMUA_Achr4G24050_001]
Coordinates
chr4:-:23994139..23998993
Molecular Weight (calculated)
13046.6 Da
IEP (calculated)
6.637
GRAVY (calculated)
-0.367
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVMKFCGEC NNVLYPKEDR EQRILLFACR NCDHQEVADD CVAYRMEINH SVGERSQVLQ DVAADPALPR TRNVRCANCH HPEAVFFQAP SKAEVGMALF
101: FICCNPNCGH RWRD
101: FICCNPNCGH RWRD
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.