Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009215_P001 | Maize | nucleus | 14.04 | 88.89 |
| GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 85.09 | 84.35 |
| CDX99562 | Canola | nucleus | 81.58 | 83.78 |
| CDX86852 | Canola | nucleus | 86.84 | 75.57 |
| AT4G16265.2 | Thale cress | extracellular | 86.84 | 74.44 |
| GSMUA_Achr4P24050_001 | Banana | nucleus | 71.05 | 71.05 |
| OQU90254 | Sorghum | nucleus | 59.65 | 59.65 |
| Os07t0615800-00 | Rice | nucleus | 57.02 | 56.03 |
| TraesCS2B01G195100.1 | Wheat | nucleus | 55.26 | 55.26 |
| TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 53.51 | 53.51 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 53.51 | 53.51 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 30.7 | 48.61 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 20.18 | 46.94 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 37.72 | 36.75 |
| Zm00001d022141_P007 | Maize | nucleus | 58.77 | 34.54 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | EntrezGene:820954 | UniProt:A0A178VJH2 | EMBL:AB026636 | ProteinID:AEE75891.1 |
| ArrayExpress:AT3G16980 | EnsemblPlantsGene:AT3G16980 | RefSeq:AT3G16980 | TAIR:AT3G16980 | RefSeq:AT3G16980-TAIR-G | EnsemblPlants:AT3G16980.1 |
| TAIR:AT3G16980.1 | EMBL:BT012109 | EMBL:BT012363 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0000419 |
| GO:GO:0001193 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006283 | GO:GO:0006351 | GO:GO:0006367 |
| GO:GO:0006379 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046872 | InterPro:IPR001222 | RefSeq:NP_188323.1 | Symbol:NRPB9A |
| ProteinID:OAP06560.1 | PFAM:PF01096 | PFAM:PF02150 | PIRSF:PIRSF005586 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01030 |
| PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | UniProt:Q6NLH0 | InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 |
| SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI000016340E | InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS | : |
Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
Coordinates
chr3:+:5794392..5795827
Molecular Weight (calculated)
13276.8 Da
IEP (calculated)
7.644
GRAVY (calculated)
-0.647
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.