Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G031100.1 | Barley | cytosol | 41.88 | 100.0 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 39.32 | 63.89 |
| Os07t0615800-00 | Rice | nucleus | 51.28 | 51.72 |
| OQU90254 | Sorghum | nucleus | 49.57 | 50.88 |
| AT3G16980.1 | Thale cress | nucleus | 36.75 | 37.72 |
| Bra033550.1-P | Field mustard | nucleus | 36.75 | 37.72 |
| Bra040570.1-P | Field mustard | nucleus | 36.75 | 37.72 |
| CDY42543 | Canola | nucleus | 36.75 | 37.72 |
| CDY72355 | Canola | nucleus | 36.75 | 37.72 |
| CDX99562 | Canola | nucleus | 34.19 | 36.04 |
| GSMUA_Achr4P24050_001 | Banana | nucleus | 34.19 | 35.09 |
| AT4G16265.2 | Thale cress | extracellular | 37.61 | 33.08 |
| Zm00001d022141_P007 | Maize | nucleus | 52.14 | 31.44 |
| CDX86852 | Canola | nucleus | 35.04 | 31.3 |
| CDY32231 | Canola | cytosol, nucleus, plastid | 27.35 | 27.83 |
| HORVU5Hr1G023090.3 | Barley | cytosol | 35.9 | 26.75 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G031050.2 | EnsemblPlantsGene:HORVU2Hr1G031050 | Gene3D:2.20.25.10 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:DNA-dir_RNA_pol_M/15kDasu | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF16 |
| SEG:seg | SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI000B468E57 | UniProt:A0A287HK45 | MapMan:15.1.6.7 |
Description
No Description!
Coordinates
chrchr2H:-:116290163..116296442
Molecular Weight (calculated)
13681.2 Da
IEP (calculated)
9.273
GRAVY (calculated)
-1.178
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: AKPRRGQQRN RETERGEERR GHRRRHERPQ VLQQMSDNML YPQEDKVMHV LLYACSNCQH QEIAADTCVY KRVLRKSADE PKDTLKDAAA DPSLPRTKSV
101: KCYNCGYPEA AYFQVCK
101: KCYNCGYPEA AYFQVCK
001: MFSIGLKLQL FSTFAAYEPL ILFFFEMFSN NILYPKEDKE QSILLYACRN CDHQEAADNN CVYRNEVHHS VSEQTQILSD VASDPTLPRT KAVRCAKCQH
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.