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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 3
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX99562 Canola nucleus 80.92 95.5
AT3G16980.1 Thale cress nucleus 75.57 86.84
CDY42543 Canola nucleus 72.52 83.33
CDY72355 Canola nucleus 72.52 83.33
Zm00001d009215_P001 Maize nucleus 9.92 72.22
GSMUA_Achr1P01580_001 Banana cytosol, nucleus, plastid 63.36 72.17
GSMUA_Achr4P24050_001 Banana nucleus 58.02 66.67
CDY32231 Canola cytosol, nucleus, plastid 54.96 62.61
OQU90254 Sorghum nucleus 48.09 55.26
Os07t0615800-00 Rice nucleus 45.04 50.86
TraesCS2B01G195100.1 Wheat nucleus 43.51 50.0
TraesCS2A01G168800.1 Wheat cytosol, mitochondrion, nucleus 42.75 49.12
TraesCS2D01G176400.1 Wheat cytosol, mitochondrion, nucleus 42.75 49.12
HORVU5Hr1G013420.1 Barley nucleus 25.19 45.83
HORVU2Hr1G031100.1 Barley cytosol 16.79 44.9
HORVU2Hr1G031050.2 Barley cytosol, nucleus 31.3 35.04
Zm00001d022141_P007 Maize nucleus 48.09 32.47
Protein Annotations
MapMan:15.1.6.7Gene3D:2.20.25.10GO:A0A078DCQ4EnsemblPlants:CDX86852ProteinID:CDX86852ProteinID:CDX86852.1
InterPro:DNA-dir_RNA_pol-M_15_CSInterPro:DNA-dir_RNA_pol_M/15kDasuGO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0006139
GO:GO:0006351GO:GO:0006379GO:GO:0008150GO:GO:0008152GO:GO:0008270GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00145608001InterPro:IPR001222PFAM:PF01096PFAM:PF02150PIRSF:PIRSF005586
ScanProsite:PS01030PFscan:PS51133PANTHER:PTHR11239PANTHER:PTHR11239:SF15InterPro:Rpa12/Rpb9/Rpc10/TFSSMART:SM00440
SMART:SM00661SUPFAM:SSF57783UniParc:UPI0004EEAF5CInterPro:Zn_ribbon_RPB9_CInterPro:Znf_TFIIS:
Description
BnaA09g22420D
Coordinates
chrLK031847:-:1259180..1261103
Molecular Weight (calculated)
15680.7 Da
IEP (calculated)
8.417
GRAVY (calculated)
-0.646
Length
131 amino acids
Sequence
(BLAST)
001: MYIFPITIFN RFRRHDISYT MKFCRECNNI LYPKEDKEQK ILRYACRNCD YQEIADNYCV HRNEVHHSVS EKTQILTDVA SDPTLPRTKA VRCAKCQHRE
101: AVFFQATTRS EDGMALFFVC CNRNCGHRWR D
Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.