Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX99562 | Canola | nucleus | 80.92 | 95.5 |
AT3G16980.1 | Thale cress | nucleus | 75.57 | 86.84 |
CDY42543 | Canola | nucleus | 72.52 | 83.33 |
CDY72355 | Canola | nucleus | 72.52 | 83.33 |
Zm00001d009215_P001 | Maize | nucleus | 9.92 | 72.22 |
GSMUA_Achr1P01580_001 | Banana | cytosol, nucleus, plastid | 63.36 | 72.17 |
GSMUA_Achr4P24050_001 | Banana | nucleus | 58.02 | 66.67 |
CDY32231 | Canola | cytosol, nucleus, plastid | 54.96 | 62.61 |
OQU90254 | Sorghum | nucleus | 48.09 | 55.26 |
Os07t0615800-00 | Rice | nucleus | 45.04 | 50.86 |
TraesCS2B01G195100.1 | Wheat | nucleus | 43.51 | 50.0 |
TraesCS2A01G168800.1 | Wheat | cytosol, mitochondrion, nucleus | 42.75 | 49.12 |
TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 42.75 | 49.12 |
HORVU5Hr1G013420.1 | Barley | nucleus | 25.19 | 45.83 |
HORVU2Hr1G031100.1 | Barley | cytosol | 16.79 | 44.9 |
HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 31.3 | 35.04 |
Zm00001d022141_P007 | Maize | nucleus | 48.09 | 32.47 |
Protein Annotations
MapMan:15.1.6.7 | Gene3D:2.20.25.10 | GO:A0A078DCQ4 | EnsemblPlants:CDX86852 | ProteinID:CDX86852 | ProteinID:CDX86852.1 |
InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00145608001 | InterPro:IPR001222 | PFAM:PF01096 | PFAM:PF02150 | PIRSF:PIRSF005586 |
ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | InterPro:Rpa12/Rpb9/Rpc10/TFS | SMART:SM00440 |
SMART:SM00661 | SUPFAM:SSF57783 | UniParc:UPI0004EEAF5C | InterPro:Zn_ribbon_RPB9_C | InterPro:Znf_TFIIS | : |
Description
BnaA09g22420D
Coordinates
chrLK031847:-:1259180..1261103
Molecular Weight (calculated)
15680.7 Da
IEP (calculated)
8.417
GRAVY (calculated)
-0.646
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MYIFPITIFN RFRRHDISYT MKFCRECNNI LYPKEDKEQK ILRYACRNCD YQEIADNYCV HRNEVHHSVS EKTQILTDVA SDPTLPRTKA VRCAKCQHRE
101: AVFFQATTRS EDGMALFFVC CNRNCGHRWR D
101: AVFFQATTRS EDGMALFFVC CNRNCGHRWR D
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.