Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | CDX90948 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | CDX97257 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | CDY01921 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | CDY64806 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 86.73 | 95.4 |
| AT3G19895.1 | Thale cress | plastid | 83.09 | 82.49 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 63.45 | 59.05 |
| PGSC0003DMT400082437 | Potato | plastid | 59.09 | 58.14 |
| Solyc04g009340.2.1 | Tomato | nucleus | 59.27 | 58.01 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 18.55 | 57.63 |
| KRH29221 | Soybean | nucleus | 61.09 | 57.44 |
| KRH24219 | Soybean | nucleus | 61.27 | 57.41 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 30.18 | 53.04 |
| EES07813 | Sorghum | plastid | 47.27 | 52.42 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 47.64 | 52.3 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 47.45 | 52.1 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 36.55 | 50.89 |
| Os02t0829600-01 | Rice | plastid | 48.0 | 50.57 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 47.64 | 49.34 |
| Zm00001d018533_P003 | Maize | plastid | 46.55 | 48.95 |
| CDX95798 | Canola | extracellular | 5.64 | 27.43 |
| CDY60118 | Canola | nucleus | 22.73 | 26.94 |
| CDY23555 | Canola | nucleus | 22.73 | 26.88 |
| CDX70167 | Canola | nucleus | 17.09 | 26.11 |
| CDX98826 | Canola | nucleus | 16.73 | 25.21 |
| CDY22467 | Canola | mitochondrion | 16.91 | 23.79 |
| CDY69157 | Canola | extracellular, golgi, vacuole | 8.36 | 15.38 |
Protein Annotations
| EnsemblPlants:CDY33428 | EnsemblPlantsGene:GSBRNA2T00054350001 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | InterPro:IPNS-like | InterPro:IPR013083 |
| InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | ProteinID:CDY33428 | ProteinID:CDY33428.1 |
| SUPFAM:SSF51197 | SUPFAM:SSF57850 | UniParc:UPI0004EE8077 | UniProt:A0A078H991 | MapMan:35.1 | : |
Description
BnaC01g32970DBnaC01g32970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H991]
Coordinates
chrLK032314:-:188456..191957
Molecular Weight (calculated)
59282.7 Da
IEP (calculated)
8.132
GRAVY (calculated)
-0.227
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDYRHVSSP ITPSTFIPAH SPSASPRLNK PHPITATPPI SASHPTGDST LMSSSGCPLA RVRLSDILPY EGAPSPSYAK AVEALSTSLM RYNASVIELG
101: SEDTALMRCG LEAARLYFRT RNSVSGKANR GLSMYRAGRS VEDLDSSPPC MAEVFRCLGK VARAALSAVA RHLRLRSDVF NHMLDDFPLA PNEVSSSVLL
201: ASYAHASIQN GKPASGGGNI EFEKGLLTLF CSDGSGIQVC DPNGRWYAAD NGCGIGDILL ITGKALSHAT AGLRPAASYR ATTDHFSGTD TRGRASLAFR
301: LMPKSNAILD CSPVEAAGHV IPQSYVPVSV SQFMDNLLAE NETPVTPPVK TNVSRDDVCK EPSLRSVLSD PISGAFLEDA IVVSCGHSFG GLMLRRVLEM
401: SRCTLCNAEI EPGSLVPNHA LRAAASAIKQ QDDKRLFHNA AMRRRRKEMS DQMDVEHGDP ATDDGLQQRV VHYPFAVNEK VLIKGNRRTP EKYVGKEAIV
501: TSQCLNGWYL LKIVESGDSV RLQYRSLKKM TNDDRGGGGL LVQPVESNSL
101: SEDTALMRCG LEAARLYFRT RNSVSGKANR GLSMYRAGRS VEDLDSSPPC MAEVFRCLGK VARAALSAVA RHLRLRSDVF NHMLDDFPLA PNEVSSSVLL
201: ASYAHASIQN GKPASGGGNI EFEKGLLTLF CSDGSGIQVC DPNGRWYAAD NGCGIGDILL ITGKALSHAT AGLRPAASYR ATTDHFSGTD TRGRASLAFR
301: LMPKSNAILD CSPVEAAGHV IPQSYVPVSV SQFMDNLLAE NETPVTPPVK TNVSRDDVCK EPSLRSVLSD PISGAFLEDA IVVSCGHSFG GLMLRRVLEM
401: SRCTLCNAEI EPGSLVPNHA LRAAASAIKQ QDDKRLFHNA AMRRRRKEMS DQMDVEHGDP ATDDGLQQRV VHYPFAVNEK VLIKGNRRTP EKYVGKEAIV
501: TSQCLNGWYL LKIVESGDSV RLQYRSLKKM TNDDRGGGGL LVQPVESNSL
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.