CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60118	Canola	nucleus	95.48	95.69
AT3G12940.2	Thale cress	nucleus	87.96	83.47
PGSC0003DMT400057242	Potato	nucleus	71.4	70.34
VIT_19s0027g00600.t01	Wine grape	cytosol	74.41	69.2
Solyc07g066450.2.1	Tomato	nucleus	71.18	66.73
KRH13671	Soybean	cytosol	58.92	64.47
GSMUA_Achr11P...	Banana	cytosol, extracellular, peroxisome	65.38	64.27
KRH43789	Soybean	nucleus	68.6	63.29
OQU89978	Sorghum	cytosol, nucleus, peroxisome	60.22	59.2
TraesCS2D01G235000.1	Wheat	cytosol	59.35	57.38
TraesCS2B01G252300.1	Wheat	cytosol	58.92	56.96
Zm00001d006430_P001	Maize	cytosol	60.22	54.05
Os07t0496900-02	Rice	nucleus	59.35	53.7
Zm00001d021542_P001	Maize	cytosol	26.67	46.79
CDY42216	Canola	cytosol, mitochondrion, plastid	27.1	25.2
CDY33428	Canola	plastid	26.88	22.73
CDX95798	Canola	extracellular	3.01	12.39
CDY69157	Canola	extracellular, golgi, vacuole	7.53	11.71
CDY22467	Canola	mitochondrion	9.46	11.25
CDX98826	Canola	nucleus	8.39	10.68
CDX70167	Canola	nucleus	7.96	10.28

Protein Annotations

EnsemblPlants:CDY23555	EnsemblPlantsGene:GSBRNA2T00023743001	Gene3D:2.60.120.330	InterPro:IPNS-like	InterPro:IPR027443	PANTHER:PTHR33644
PANTHER:PTHR33644:SF2	ProteinID:CDY23555	ProteinID:CDY23555.1	SEG:seg	SUPFAM:SSF51197	UniParc:UPI0004EADB77
UniProt:A0A078GAW8	MapMan:35.2	:	:	:	:

Description

BnaC05g40390DBnaC05g40390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAW8]

Coordinates

chrLK032145:-:34725..36655

Molecular Weight (calculated)

51991.6 Da

IEP (calculated)

6.896

GRAVY (calculated)

-0.418

Length

465 amino acids

Sequence
(BLAST)

001: MAANGLPTLG RVKLCDLLPT EGLPSDSYKL AVSTLSQSLA QYSAAIIQFP SADAALLRSG LDSARLYFHQ RDSYPSTNDS REWCKTSGYY SDPHSWQESY
101: EYRPGLTFTE AAAASMEFPP SGLPDIFGLL GKASRLVLDA IGFYLNLRSS PFTEILDNVP LRSNEVSSSV LSVCCYARPS FHHHHNLAED EQLLLYSDHD
201: HQLDKSLISF VKSDKAGLHV RDMHGQWILV DVDLGPQEAV VYPGLALYQA TAGYVSPAVY RTDFNSMQGS IEGRFSLAFK LMPKSMTNLS CSEMRAAGHG
301: VDAQFLIPVS VDDFMQRPHS NDELFNRQTL QSFTVPQSQD GSMKQMKKRK KSDSRLKPLP PSKRLRLEAQ RVLKERVQEI ADKKGIKLRF CNPKDCESNH
401: NTMNSPCAHI KMEIGWPQGV PFVHPHDLPN KAKIGFLETY EPGWSETHYM ELSLSEAAQG NQHVT

Best Arabidopsis Sequence Match ( AT3G12940.1 )
(BLAST)

001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.