Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034715.1-P | Field mustard | nucleus | 83.47 | 88.15 |
| CDY23555 | Canola | nucleus | 83.47 | 87.96 |
| CDY60118 | Canola | nucleus | 83.27 | 87.93 |
| PGSC0003DMT400057242 | Potato | nucleus | 71.63 | 74.36 |
| VIT_19s0027g00600.t01 | Wine grape | cytosol | 74.69 | 73.2 |
| Solyc07g066450.2.1 | Tomato | nucleus | 72.45 | 71.57 |
| KRH13671 | Soybean | cytosol | 59.59 | 68.71 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, peroxisome | 65.92 | 68.29 |
| KRH43789 | Soybean | nucleus | 69.59 | 67.66 |
| OQU89978 | Sorghum | cytosol, nucleus, peroxisome | 57.35 | 59.41 |
| TraesCS2D01G235000.1 | Wheat | cytosol | 57.14 | 58.21 |
| TraesCS2B01G252300.1 | Wheat | cytosol | 56.73 | 57.8 |
| Zm00001d006430_P001 | Maize | cytosol | 57.96 | 54.83 |
| Os07t0496900-02 | Rice | nucleus | 56.73 | 54.09 |
| Zm00001d021542_P001 | Maize | cytosol | 25.1 | 46.42 |
| AT3G19895.1 | Thale cress | plastid | 24.49 | 21.66 |
| AT2G40640.1 | Thale cress | mitochondrion | 9.18 | 11.75 |
| AT5G05230.1 | Thale cress | nucleus | 7.96 | 10.74 |
Protein Annotations
| ArrayExpress:AT3G12940 | EnsemblPlants:AT3G12940.2 | EnsemblPlantsGene:AT3G12940 | EntrezGene:820479 | Gene3D:2.60.120.330 | InterPro:IPNS-like |
| InterPro:IPR027443 | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF2 | ProteinID:ANM64247.1 | ProteinID:OAP05025.1 | RefSeq:AT3G12940 |
| RefSeq:AT3G12940-TAIR-G | RefSeq:NP_001326289.1 | SEG:seg | SUPFAM:SSF51197 | TAIR:AT3G12940 | UniParc:UPI000016339C |
| UniProt:A0A178VI87 | UniProt:A0A1I9LNT9 | MapMan:35.2 | : | : | : |
Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
Coordinates
chr3:-:4129585..4132467
Molecular Weight (calculated)
54748.8 Da
IEP (calculated)
6.723
GRAVY (calculated)
-0.453
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTNCNHSSP NNTPFPFAET
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTNCNHSSP NNTPFPFAET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.