Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057242 | Potato | nucleus | 80.2 | 84.96 |
| Solyc07g066450.2.1 | Tomato | nucleus | 80.2 | 80.85 |
| KRH13671 | Soybean | cytosol | 64.6 | 76.0 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, peroxisome | 71.0 | 75.05 |
| KRH43789 | Soybean | nucleus | 75.4 | 74.8 |
| CDY60118 | Canola | nucleus | 69.4 | 74.78 |
| AT3G12940.2 | Thale cress | nucleus | 73.2 | 74.69 |
| CDY23555 | Canola | nucleus | 69.2 | 74.41 |
| Bra034715.1-P | Field mustard | nucleus | 69.0 | 74.35 |
| OQU89978 | Sorghum | cytosol, nucleus, peroxisome | 61.8 | 65.33 |
| TraesCS2D01G235000.1 | Wheat | cytosol | 59.6 | 61.95 |
| TraesCS2B01G252300.1 | Wheat | cytosol | 59.2 | 61.54 |
| Zm00001d006430_P001 | Maize | cytosol | 61.2 | 59.07 |
| Os07t0496900-02 | Rice | nucleus | 60.0 | 58.37 |
| Zm00001d021542_P001 | Maize | cytosol | 25.8 | 48.68 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 25.8 | 21.83 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 8.8 | 9.98 |
Protein Annotations
| EntrezGene:100255982 | wikigene:100255982 | Gene3D:2.60.120.330 | MapMan:35.2 | EMBL:AM428356 | ProteinID:CAN69107 |
| ProteinID:CAN69107.1 | ProteinID:CBI21777 | ProteinID:CBI21777.3 | UniProt:D7SWX7 | EMBL:FN595234 | InterPro:IPNS-like |
| InterPro:IPR027443 | EntrezGene:LOC100255982 | wikigene:LOC100255982 | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF2 | SUPFAM:SSF51197 |
| UniParc:UPI00015CA4AC | ArrayExpress:VIT_19s0027g00600 | EnsemblPlantsGene:VIT_19s0027g00600 | EnsemblPlants:VIT_19s0027g00600.t01 | RefSeq:XP_002266949 | RefSeq:XP_002266949.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr19:+:19652434..19660706
Molecular Weight (calculated)
55906.4 Da
IEP (calculated)
7.016
GRAVY (calculated)
-0.404
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGNSLPSLG RVKLCDLIAC EGLPSDSYKL SVSTLSQSLA QYSAAIIQFP SSDGALLRSG LDSAHLYFHQ RASYPAADMI HNNESREWCK TSGYYADPQQ
101: WQETYDFRPG LTPPESNSGL EFPPAGLPDI FSLLGKAARD ILDAISFYLN LRSSPFTEIL DNVPLRSREI SSSVLSVCCY GRPSFQGPQH HNLTTQEDGQ
201: LVMFSDHEHQ VDKSLITLVK SDKAGLHVRD FHGRWVLVDG DLGPQEAIVY PGLALYQATA GYVGPALHRT EISNMQGNMY GRCSLAFKLM PKSMTSLNCS
301: EMRAAGHGVE AQFQLPVPVD DFMQRSHPTE QLFNRNNFPS FNFPTAQDGS MKPLMRRRKN NSRCKPLPPS KRLRLEAQRV LKERVQDIAD KKGIKLRFCN
401: LKECESHIHT LDSPCANTRM EIGWPPGVPF VHPHDLPNKA KIGFLEAYEP GWTATHDMEL SLIEPGQASQ HSANCNCNSP VQVLYTHENT FFWTKLLFCD
101: WQETYDFRPG LTPPESNSGL EFPPAGLPDI FSLLGKAARD ILDAISFYLN LRSSPFTEIL DNVPLRSREI SSSVLSVCCY GRPSFQGPQH HNLTTQEDGQ
201: LVMFSDHEHQ VDKSLITLVK SDKAGLHVRD FHGRWVLVDG DLGPQEAIVY PGLALYQATA GYVGPALHRT EISNMQGNMY GRCSLAFKLM PKSMTSLNCS
301: EMRAAGHGVE AQFQLPVPVD DFMQRSHPTE QLFNRNNFPS FNFPTAQDGS MKPLMRRRKN NSRCKPLPPS KRLRLEAQRV LKERVQDIAD KKGIKLRFCN
401: LKECESHIHT LDSPCANTRM EIGWPPGVPF VHPHDLPNKA KIGFLEAYEP GWTATHDMEL SLIEPGQASQ HSANCNCNSP VQVLYTHENT FFWTKLLFCD
001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTNCNHSSP NNTPFPFAET
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTNCNHSSP NNTPFPFAET
Arabidopsis Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.