Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g01100.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | VIT_07s0005g01100.t01 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082437 | Potato | plastid | 66.84 | 70.66 |
| Solyc04g009340.2.1 | Tomato | nucleus | 67.17 | 70.64 |
| KRH29221 | Soybean | nucleus | 69.2 | 69.91 |
| KRH24219 | Soybean | nucleus | 69.37 | 69.85 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 58.38 | 69.0 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 20.47 | 68.36 |
| AT3G19895.1 | Thale cress | plastid | 60.41 | 64.44 |
| CDY33428 | Canola | plastid | 59.05 | 63.45 |
| Bra038238.1-P | Field mustard | plastid | 59.05 | 63.22 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 40.44 | 60.51 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 50.08 | 59.08 |
| EES07813 | Sorghum | plastid | 49.58 | 59.07 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 49.92 | 58.88 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 31.13 | 58.79 |
| Os02t0829600-01 | Rice | plastid | 50.08 | 56.7 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 50.42 | 56.12 |
| Zm00001d018533_P003 | Maize | plastid | 48.39 | 54.68 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 19.29 | 25.85 |
| VIT_19s0027g00600.t01 | Wine grape | cytosol | 21.83 | 25.8 |
Protein Annotations
| EntrezGene:100247878 | wikigene:100247878 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AM433222 |
| ProteinID:CAN71589 | ProteinID:CAN71589.1 | ProteinID:CCB51179 | ProteinID:CCB51179.1 | UniProt:F6HGH8 | EMBL:FN595754 |
| InterPro:IPNS-like | InterPro:IPR013083 | InterPro:IPR027443 | EntrezGene:LOC100247878 | wikigene:LOC100247878 | PANTHER:PTHR33644 |
| PANTHER:PTHR33644:SF1 | SUPFAM:SSF51197 | SUPFAM:SSF57850 | TIGR:TC63918 | UniParc:UPI00021092E0 | ArrayExpress:VIT_01s0010g01230 |
| EnsemblPlantsGene:VIT_01s0010g01230 | EnsemblPlants:VIT_01s0010g01230.t01 | unigene:Vvi.12280 | RefSeq:XP_002270763 | RefSeq:XP_002270763.1 | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:17019740..17056466
Molecular Weight (calculated)
62658.7 Da
IEP (calculated)
8.362
GRAVY (calculated)
-0.188
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQTSSAPAS QPIPLPSSTS SLRSPSAAPL QSQLPSPLSL GPAAPQPPPP SSHRQLPPSA VAVDHVVPIA AAHPSGEPAL TMAVPLARVR LCDIVSYDGA
101: PAGPYVRAVE ALSGSLMRHN AAVIELGSED AALMRCGLES ARLYFKARAL SVGTGGGNWG KGSRGVYMYR AGRALEDSDL SPPCMAEVFR CMGKAARAAL
201: CAIARYLRLR SDVFNPLLDD TPLPINEASS SVLVATYSHG SLQNGKGAIG GGKPAMNGEV EKGLLTLISS DNPGLQVCDP NGRWYLADGG SAPGDLLLLT
301: GKALSHATAG LRPAATYRAA SDYTSGTASG RTSLAFRLMP QGNAILDCSP IAAAGHVIPQ SYVPISVSQF MDDLSAEEDG LCNPSDSTYV ARNNFNREPS
401: LRSVLSDPLS GAFLEDAMVV SCGHTFGGLM LRKVIEMSRC TLCNAEIDTS SLIPNHALRA AAAAVKHEDD RRLFHNAALR KRRKEVGDQT DSIRRLNREN
501: GDISADDGMH RGVQYPFSVN EKVIIKGNRR TPDKFVGKEA VITSQCLNGW YLLKIIGSGE SVRLQYRSLR KILNSHAAED RCPSQPIQSS S
101: PAGPYVRAVE ALSGSLMRHN AAVIELGSED AALMRCGLES ARLYFKARAL SVGTGGGNWG KGSRGVYMYR AGRALEDSDL SPPCMAEVFR CMGKAARAAL
201: CAIARYLRLR SDVFNPLLDD TPLPINEASS SVLVATYSHG SLQNGKGAIG GGKPAMNGEV EKGLLTLISS DNPGLQVCDP NGRWYLADGG SAPGDLLLLT
301: GKALSHATAG LRPAATYRAA SDYTSGTASG RTSLAFRLMP QGNAILDCSP IAAAGHVIPQ SYVPISVSQF MDDLSAEEDG LCNPSDSTYV ARNNFNREPS
401: LRSVLSDPLS GAFLEDAMVV SCGHTFGGLM LRKVIEMSRC TLCNAEIDTS SLIPNHALRA AAAAVKHEDD RRLFHNAALR KRRKEVGDQT DSIRRLNREN
501: GDISADDGMH RGVQYPFSVN EKVIIKGNRR TPDKFVGKEA VITSQCLNGW YLLKIIGSGE SVRLQYRSLR KILNSHAAED RCPSQPIQSS S
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.