Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G172000.1 | |
| TraesCS3B01G202800.2 | |
| TraesCS3D01G178500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | TraesCS3A01G172000.1 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | TraesCS3B01G202800.2 | AT4G02150.1 | 21798944 |
| AT3G19895.1 | TraesCS3D01G178500.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 97.12 | 60.68 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 96.49 | 60.28 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 95.21 | 56.12 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 57.83 | 45.82 |
| EES07813 | Sorghum | plastid | 71.89 | 45.36 |
| Os02t0829600-01 | Rice | plastid | 71.89 | 43.1 |
| Zm00001d018533_P003 | Maize | plastid | 69.01 | 41.3 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 53.04 | 33.2 |
| Solyc04g009340.2.1 | Tomato | nucleus | 56.55 | 31.49 |
| PGSC0003DMT400082437 | Potato | plastid | 56.23 | 31.48 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 58.79 | 31.13 |
| KRH29221 | Soybean | nucleus | 56.87 | 30.43 |
| AT3G19895.1 | Thale cress | plastid | 53.67 | 30.32 |
| CDY33428 | Canola | plastid | 53.04 | 30.18 |
| Bra038238.1-P | Field mustard | plastid | 53.04 | 30.07 |
| KRH24219 | Soybean | nucleus | 55.91 | 29.81 |
| TraesCS2B01G252300.1 | Wheat | cytosol | 31.31 | 20.37 |
| TraesCS5B01G481600.1 | Wheat | nucleus | 7.03 | 6.45 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G331900.1 | EnsemblPlantsGene:TraesCS7B01G331900 | Gene3D:2.60.120.330 | InterPro:IPNS-like | InterPro:IPR027443 | PANTHER:PTHR33644 |
| PANTHER:PTHR33644:SF1 | SEG:seg | SUPFAM:SSF51197 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7B:-:586986241..586988645
Molecular Weight (calculated)
33403.7 Da
IEP (calculated)
6.220
GRAVY (calculated)
-0.020
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MACPPCPPSP LARVRLDDVA PHDGAAAPGY ARAVGALAAS LARRGAAVLE LPADDAAVIR CALESARAFF RGRHAAYLYR AGRTLEDGEL SPACMADAFR
101: CLGKAARAAL CAIARHLRLR TDVFNQLLDD TPLPVNEVSS SELLVAYSHE QPQSGHSLMG CPSRSSMPQV DRGFVTLVAS DCPGIEVCDP NGHWYLADGV
201: SGPNNLLLLT GRALSHVTAG LCPISHYRVT NENRASLTFR LVPHANAILD CSPILAAGHC IRQVYQPIPA SQFMDDSYAE EHAVSSHLEE PFESQGNFVS
301: DPSLRSVLSD PLS
101: CLGKAARAAL CAIARHLRLR TDVFNQLLDD TPLPVNEVSS SELLVAYSHE QPQSGHSLMG CPSRSSMPQV DRGFVTLVAS DCPGIEVCDP NGHWYLADGV
201: SGPNNLLLLT GRALSHVTAG LCPISHYRVT NENRASLTFR LVPHANAILD CSPILAAGHC IRQVYQPIPA SQFMDDSYAE EHAVSSHLEE PFESQGNFVS
301: DPSLRSVLSD PLS
001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN
Arabidopsis Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.