Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0253300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | Os01t0253300-01 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 72.61 | 75.65 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 72.22 | 75.25 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 73.56 | 72.32 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 43.1 | 71.89 |
| EES07813 | Sorghum | plastid | 67.82 | 71.37 |
| Zm00001d018533_P003 | Maize | plastid | 67.62 | 67.5 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 21.65 | 63.84 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 50.57 | 52.8 |
| PGSC0003DMT400082437 | Potato | plastid | 55.17 | 51.52 |
| Solyc04g009340.2.1 | Tomato | nucleus | 54.98 | 51.07 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 56.7 | 50.08 |
| AT3G19895.1 | Thale cress | plastid | 51.34 | 48.38 |
| Bra038238.1-P | Field mustard | plastid | 50.96 | 48.19 |
| CDY33428 | Canola | plastid | 50.57 | 48.0 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 36.21 | 47.85 |
| KRH24219 | Soybean | nucleus | 53.45 | 47.53 |
| KRH29221 | Soybean | nucleus | 53.26 | 47.52 |
| Os07t0496900-02 | Rice | nucleus | 23.37 | 23.74 |
| Os03t0816000-01 | Rice | plastid | 8.81 | 21.8 |
Protein Annotations
| EnsemblPlants:Os02t0829600-01 | EnsemblPlantsGene:Os02g0829600 | EntrezGene:9267029 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | InterPro:IPNS-like |
| InterPro:IPR013083 | InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | ProteinID:BAD22941.1 |
| ProteinID:BAS81730.1 | RefSeq:XP_015625513.1 | SEG:seg | SUPFAM:SSF51197 | SUPFAM:SSF57850 | UniParc:UPI00003B04B6 |
| UniProt:Q6K9T7 | MapMan:35.1 | : | : | : | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0829600-01);Similar to Sperm protamine P1 (Po1) [Contains: Sperm protamine P2 (Po2) (Main protamine)]. (Os02t0829600-02)
Coordinates
chr2:-:35667571..35671732
Molecular Weight (calculated)
56261.1 Da
IEP (calculated)
7.119
GRAVY (calculated)
-0.111
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMAASSPPP AAASSSGRLA RVRLHDLAPY DGAATPAYGR AVHALSASLT RHGAALLDLP DAHAAILRCA LQSARAFFRA NDQPAFYLYR AGGSASRTSD
101: DGGGDLVPAC MDDAFRCFGE AARAALSAIA RHLRLRTNVF DHLLDDTPLP VNEVSSSELL VAYSNQHLHT DHASSTACLG SSVPQVDRGF LVLIASDHPG
201: IEVCDPNGQW YLADGISGPG DLLLLTGRAL SHVTAGLRPT SRYRITNETR ASLTFRLMPH ANAILDCSPI AAAGHCVPQM YQPISASQFM DDLCAEERAV
301: SNHSEAPSES QGSFISEPSL RSVLSDPLSG AFLEDAMVLL CGHSFGGLML KKVIEMARCT ICNGEVDPAT LFPNLALRAV ATVVKMEDDR RLFHNAALRK
401: HRKEVTERMD VLKSTGGSRG NGELVLDAEN PTSPRGVQYP FVVGERVLIM GNRRTPDKFV GKEAVITSQC LNGWYLVKAV DSGESIRLQY RSLKKVSELQ
501: LQSEMRLQPL TFLHNKYPSS GS
101: DGGGDLVPAC MDDAFRCFGE AARAALSAIA RHLRLRTNVF DHLLDDTPLP VNEVSSSELL VAYSNQHLHT DHASSTACLG SSVPQVDRGF LVLIASDHPG
201: IEVCDPNGQW YLADGISGPG DLLLLTGRAL SHVTAGLRPT SRYRITNETR ASLTFRLMPH ANAILDCSPI AAAGHCVPQM YQPISASQFM DDLCAEERAV
301: SNHSEAPSES QGSFISEPSL RSVLSDPLSG AFLEDAMVLL CGHSFGGLML KKVIEMARCT ICNGEVDPAT LFPNLALRAV ATVVKMEDDR RLFHNAALRK
401: HRKEVTERMD VLKSTGGSRG NGELVLDAEN PTSPRGVQYP FVVGERVLIM GNRRTPDKFV GKEAVITSQC LNGWYLVKAV DSGESIRLQY RSLKKVSELQ
501: LQSEMRLQPL TFLHNKYPSS GS
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.