Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000891.1-P | |
| Bra008559.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | Bra000891.1-P | AT4G02150.1 | 21798944 |
| AT3G19895.1 | Bra008559.1-P | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 90.58 | 100.0 |
| AT3G19895.1 | Thale cress | plastid | 80.98 | 80.69 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 63.22 | 59.05 |
| PGSC0003DMT400082437 | Potato | plastid | 59.42 | 58.68 |
| KRH24219 | Soybean | nucleus | 62.14 | 58.43 |
| Solyc04g009340.2.1 | Tomato | nucleus | 59.42 | 58.36 |
| KRH29221 | Soybean | nucleus | 61.78 | 58.29 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 18.48 | 57.63 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 30.07 | 53.04 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 47.46 | 52.3 |
| EES07813 | Sorghum | plastid | 46.92 | 52.22 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 47.28 | 52.1 |
| Os02t0829600-01 | Rice | plastid | 48.19 | 50.96 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 36.23 | 50.63 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 47.64 | 49.53 |
| Zm00001d018533_P003 | Maize | plastid | 46.56 | 49.14 |
| Bra034715.1-P | Field mustard | nucleus | 23.01 | 27.37 |
| Bra000197.1-P | Field mustard | nucleus | 16.67 | 26.9 |
| Bra009097.1-P | Field mustard | nucleus | 17.03 | 26.11 |
Protein Annotations
| EnsemblPlants:Bra038238.1 | EnsemblPlants:Bra038238.1-P | EnsemblPlantsGene:Bra038238 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | InterPro:IPNS-like |
| InterPro:IPR013083 | InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | SUPFAM:SSF51197 |
| SUPFAM:SSF57850 | UniParc:UPI0002544AC9 | UniProt:M4FAX3 | MapMan:35.1 | : | : |
Description
AT3G19895 (E=1e-267) | unknown protein
Coordinates
chrA01:+:21388182..21391066
Molecular Weight (calculated)
59417.9 Da
IEP (calculated)
8.132
GRAVY (calculated)
-0.225
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDYRHVSSP ITPPTFIPAH SPSPSPRLNK PHLITVTPPI SASHPTGDST PMMSSSSGCP LARVRLSDIL PYEGAPSPSY AKAVEALSAS LMRYNASVIE
101: LGSEDTALMR CGLEAARLYF RTRSSVSGKP NRGLSMYRAG RSVEDLDSSP PCMAEVFRCL GKVARAALSA VARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LVSSYAHASI QNGKPASGGG SIEIEKGLLT LFCSDGSGIQ VCDPNGRWYA ADSGCGIGDI LLITGKALSH ATAGLRPAAS YRATSDHFSG TDTRGRASLA
301: FRLMPKSNAI LDCSPVEAAG HVIPQSYVPV SVSQFMDNLL AENETPVTPP VKTNVSRDDV CKEPSLRSVL SDPVSGAFLE DAIVVSCGHS FGGLMLRRVL
401: EMSRCTLCNA EIEPGSLVPN HALRAAASAI KQQDDKRLFH NAAMRRRRKE MSDQMDVEHG DPATDDGLQQ RVVHYPFAVN EKVLIKGNRR TPEKYVGKEA
501: IVTSQCLNGW YLLKIVESGD SVRLQYRSLK KMTNDDRGGG GLPVQPVESN SL
101: LGSEDTALMR CGLEAARLYF RTRSSVSGKP NRGLSMYRAG RSVEDLDSSP PCMAEVFRCL GKVARAALSA VARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LVSSYAHASI QNGKPASGGG SIEIEKGLLT LFCSDGSGIQ VCDPNGRWYA ADSGCGIGDI LLITGKALSH ATAGLRPAAS YRATSDHFSG TDTRGRASLA
301: FRLMPKSNAI LDCSPVEAAG HVIPQSYVPV SVSQFMDNLL AENETPVTPP VKTNVSRDDV CKEPSLRSVL SDPVSGAFLE DAIVVSCGHS FGGLMLRRVL
401: EMSRCTLCNA EIEPGSLVPN HALRAAASAI KQQDDKRLFH NAAMRRRRKE MSDQMDVEHG DPATDDGLQQ RVVHYPFAVN EKVLIKGNRR TPEKYVGKEA
501: IVTSQCLNGW YLLKIVESGD SVRLQYRSLK KMTNDDRGGG GLPVQPVESN SL
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.