Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 80.51 | 89.2 |
| CDY33428 | Canola | plastid | 82.49 | 83.09 |
| Bra038238.1-P | Field mustard | plastid | 80.69 | 80.98 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 64.44 | 60.41 |
| PGSC0003DMT400082437 | Potato | plastid | 60.83 | 60.29 |
| Solyc04g009340.2.1 | Tomato | nucleus | 61.01 | 60.14 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 18.95 | 59.32 |
| KRH29221 | Soybean | nucleus | 61.55 | 58.29 |
| KRH24219 | Soybean | nucleus | 61.73 | 58.26 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 30.32 | 53.67 |
| EES07813 | Sorghum | plastid | 47.65 | 53.23 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 48.01 | 53.09 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 47.83 | 52.89 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 36.82 | 51.65 |
| Os02t0829600-01 | Rice | plastid | 48.38 | 51.34 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 47.83 | 49.91 |
| Zm00001d018533_P003 | Maize | plastid | 46.75 | 49.52 |
| AT5G05230.1 | Thale cress | nucleus | 16.25 | 24.79 |
| AT3G12940.2 | Thale cress | nucleus | 21.66 | 24.49 |
| AT2G40640.1 | Thale cress | mitochondrion | 15.16 | 21.93 |
Protein Annotations
| Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:821527 | ProteinID:AEE76305.1 | EMBL:AK118963 |
| ArrayExpress:AT3G19895 | EnsemblPlantsGene:AT3G19895 | RefSeq:AT3G19895 | TAIR:AT3G19895 | RefSeq:AT3G19895-TAIR-G | EnsemblPlants:AT3G19895.1 |
| TAIR:AT3G19895.1 | GO:GO:0008150 | InterPro:IPNS-like | InterPro:IPR013083 | InterPro:IPR027443 | RefSeq:NP_683575.2 |
| PO:PO:0000005 | PO:PO:0000293 | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | UniProt:Q8GWB1 | SUPFAM:SSF51197 |
| SUPFAM:SSF57850 | UniParc:UPI00000ADFE3 | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
Coordinates
chr3:-:6917242..6921600
Molecular Weight (calculated)
59698.5 Da
IEP (calculated)
8.168
GRAVY (calculated)
-0.171
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.