Factsheet for AT5G05230.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98826	Canola	nucleus	76.58	76.16
Bra009097.1-P	Field mustard	nucleus	74.93	75.56
CDX70167	Canola	nucleus	74.93	75.56
CDX95798	Canola	extracellular	20.66	66.37
KRH53725	Soybean	nucleus	45.45	38.55
KRH64207	Soybean	nucleus	44.35	37.79
VIT_13s0067g03030.t01	Wine grape	nucleus	42.7	35.15
PGSC0003DMT400030432	Potato	nucleus	40.77	34.99
Solyc05g052220.2.1	Tomato	nucleus	39.94	34.77
AT2G40640.1	Thale cress	mitochondrion	34.16	32.38
AT3G19895.1	Thale cress	plastid	24.79	16.25
AT3G12940.2	Thale cress	nucleus	10.74	7.96

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:830405	UniProt:A0A178UI17	ProteinID:AED90844.1	EMBL:AK228492
ArrayExpress:AT5G05230	EnsemblPlantsGene:AT5G05230	RefSeq:AT5G05230	TAIR:AT5G05230	RefSeq:AT5G05230-TAIR-G	EnsemblPlants:AT5G05230.1
TAIR:AT5G05230.1	Unigene:At.33017	ProteinID:BAB09966.1	EMBL:BT014987	EMBL:BT015849	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	RefSeq:NP_196142.3
ProteinID:OAO93309.1	PFAM:PF04564	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007095	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	UniProt:Q6DBN5	SUPFAM:SSF57850
UniParc:UPI000034F227	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]

Coordinates

chr5:+:1551298..1553808

Molecular Weight (calculated)

39373.4 Da

IEP (calculated)

4.957

GRAVY (calculated)

-0.602

Length

363 amino acids

Sequence
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.