CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009097.1-P	Field mustard	nucleus	99.44	99.44
CDX98826	Canola	nucleus	86.39	85.21
AT5G05230.1	Thale cress	nucleus	75.56	74.93
CDX95798	Canola	extracellular	23.06	73.45
KRH64207	Soybean	nucleus	43.89	37.09
KRH53725	Soybean	nucleus	43.33	36.45
Solyc05g052220.2.1	Tomato	nucleus	41.11	35.49
VIT_13s0067g03030.t01	Wine grape	nucleus	43.33	35.37
PGSC0003DMT400030432	Potato	nucleus	41.11	34.99
CDY22467	Canola	mitochondrion	34.72	31.97
CDY42216	Canola	cytosol, mitochondrion, plastid	26.11	18.8
CDY33428	Canola	plastid	26.11	17.09
CDY69157	Canola	extracellular, golgi, vacuole	13.06	15.72
CDY23555	Canola	nucleus	10.28	7.96
CDY60118	Canola	nucleus	10.0	7.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078C0A5	EnsemblPlants:CDX70167	ProteinID:CDX70167	ProteinID:CDX70167.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00136284001	InterPro:IPR003613
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850
UniPathway:UPA00143	UniParc:UPI0004EDE3D8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA10g25160D

Coordinates

chrLK031790:-:3378335..3380375

Molecular Weight (calculated)

39116.9 Da

IEP (calculated)

4.719

GRAVY (calculated)

-0.662

Length

360 amino acids

Sequence
(BLAST)

001: MSGKGLSPAS FTAPPMTVQD ADPLRFRVGE QDPKTREFAA FIGDQHRYFA AAAAAAAANP LPHPHLEFRQ SFYSESGNPN DSGGSDGEEE VEEEDEEDDD
101: VDGNEGDGMN KDVGEDGGAV VGIEQDNAAY YSQQFKAMEA SFVSRHEESS SVAAENGCDV SGRRDASSSS LSNSIESLRT ILSDPLTGAL MSDAMILPCG
201: HTFGAGGIEQ VKQMKACCTC SQPVSEDSIT PNLTLRVAVQ AFCREEKSQS NHSSKRKREG FDQERRSFGD TAYTSRSRNR TNHFPFAVAD RVIIKGNKRT
301: PPRFVGREAV VTTQCLNGWY VVKTLDNAES VKLQYRSLAK ATEDDPSTKA TPSKLVSNWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.