CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034715.1-P	Field mustard	nucleus	99.35	99.35
CDY23555	Canola	nucleus	95.69	95.48
AT3G12940.2	Thale cress	nucleus	87.93	83.27
PGSC0003DMT400057242	Potato	nucleus	70.91	69.7
VIT_19s0027g00600.t01	Wine grape	cytosol	74.78	69.4
Solyc07g066450.2.1	Tomato	nucleus	70.91	66.33
KRH13671	Soybean	cytosol	58.62	64.0
GSMUA_Achr11P...	Banana	cytosol, extracellular, peroxisome	65.09	63.85
KRH43789	Soybean	nucleus	68.32	62.9
OQU89978	Sorghum	cytosol, nucleus, peroxisome	59.27	58.14
TraesCS2D01G235000.1	Wheat	cytosol	59.05	56.96
TraesCS2B01G252300.1	Wheat	cytosol	58.62	56.55
Os07t0496900-02	Rice	nucleus	58.84	53.11
Zm00001d006430_P001	Maize	cytosol	59.27	53.09
Zm00001d021542_P001	Maize	cytosol	25.86	45.28
CDY42216	Canola	cytosol, mitochondrion, plastid	27.16	25.2
CDY33428	Canola	plastid	26.94	22.73
CDX95798	Canola	extracellular	3.02	12.39
CDY69157	Canola	extracellular, golgi, vacuole	7.97	12.37
CDY22467	Canola	mitochondrion	9.27	11.0
CDX98826	Canola	nucleus	8.19	10.41
CDX70167	Canola	nucleus	7.76	10.0

Protein Annotations

EnsemblPlants:CDY60118	EnsemblPlantsGene:GSBRNA2T00028213001	Gene3D:2.60.120.330	InterPro:IPNS-like	InterPro:IPR027443	PANTHER:PTHR33644
PANTHER:PTHR33644:SF2	ProteinID:CDY60118	ProteinID:CDY60118.1	SEG:seg	SUPFAM:SSF51197	UniParc:UPI0004EF4A94
UniProt:A0A078J6C4	MapMan:35.2	:	:	:	:

Description

BnaA05g26260DBnaA05g26260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6C4]

Coordinates

chrLK033845:+:14618..16794

Molecular Weight (calculated)

51795.3 Da

IEP (calculated)

6.791

GRAVY (calculated)

-0.435

Length

464 amino acids

Sequence
(BLAST)

001: MAANGLPTLG RVKLCDLLPT EGSPSDSYKL AVSTLSQSLA QYSAAIIQFP ATDAALLRSG LDSAKLYFHQ RDSYPPTIHT TNDSREWCKT SGYYSDPHSW
101: QESYEYRPGL TFTESAEFPP SGLPDIFGLL GKASRLVLDA VGFYLNLRSS PFTEILDNVP LRSNEVSSSV LSVCCYARPS FHHHNLAEDE QLLLYSDHDH
201: QLDKSLISFV KSDKAGLHVR DMHGQWILVD VDLGPQEAVV YPGLALYQAT AGYVSPAVYR TDLNSMQGSI EGRFSLAFKL MPKSMTSLSC SEMRAAGHGV
301: DAQFLIPVSV DDFMQRPHSN DELFNRQTLQ SFSVPQSQDG SMKQMKKRKK SDSRLKPLPP SKRLRLEAQR VLKERVQEIA DKKGIKLRFC NPKDCESNHN
401: TMNSPCAHIK MEIGWPQGVP FVHPHDLPNK AKIGFLETYE PGWSETHDME LSLSEAAQGN QHVT

Best Arabidopsis Sequence Match ( AT3G12940.1 )
(BLAST)

001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.