Factsheet for PGSC0003DMT400057242

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g066450.2.1	Tomato	nucleus	97.67	92.94
VIT_19s0027g00600.t01	Wine grape	cytosol	84.96	80.2
KRH13671	Soybean	cytosol	64.62	71.76
AT3G12940.2	Thale cress	nucleus	74.36	71.63
CDY23555	Canola	nucleus	70.34	71.4
KRH43789	Soybean	nucleus	76.06	71.23
Bra034715.1-P	Field mustard	nucleus	69.92	71.12
CDY60118	Canola	nucleus	69.7	70.91
GSMUA_Achr11P...	Banana	cytosol, extracellular, peroxisome	70.55	70.4
OQU89978	Sorghum	cytosol, nucleus, peroxisome	62.71	62.58
TraesCS2D01G235000.1	Wheat	cytosol	60.38	59.25
TraesCS2B01G252300.1	Wheat	cytosol	59.96	58.84
Zm00001d006430_P001	Maize	cytosol	62.08	56.56
Os07t0496900-02	Rice	nucleus	61.02	56.03
Zm00001d021542_P001	Maize	cytosol	26.69	47.55
PGSC0003DMT400082437	Potato	plastid	25.85	21.82
PGSC0003DMT400030432	Potato	nucleus	8.9	9.93
PGSC0003DMT400048900	Potato	cytosol	1.27	7.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400057242	EnsemblPlantsGene:PGSC0003DMG400022235	EntrezGene:102581396	Gene3D:2.60.120.330	InterPro:IPNS-like	InterPro:IPR027443
PANTHER:PTHR33644	PANTHER:PTHR33644:SF2	PGSC:PGSC0003DMG400022235	RefSeq:XP_006346041.1	SEG:seg	SUPFAM:SSF51197
UniParc:UPI0002948A97	UniProt:M1C0P5	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022235]

Coordinates

chr7:+:56498389..56502222

Molecular Weight (calculated)

52512.3 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.445

Length

472 amino acids

Sequence
(BLAST)

001: MAGNGLPALG RVKLSDLVPL EGLPSDSYKL SVSTLSQSLA QYSAAIIQLS TSDGALLRSS LESARLYFQH KPSYPSADVI HSDDSREWCK TSGYHADPQQ
101: WQETYDFRPG LTPSEPTSDI EFPPAGLSDI FSLLGRAARD ILDAISFYLN LRSSPFTEIL DNVPLRNREI SSSVLSVCCH ARPSFQGAQH HGLTTQEDGQ
201: LGMFSDHEHQ VDRSLVTIVK SDRPGLHVRD FHGHWVLVDG DLGPQEAIVY PGLALYQATA GYISPALHRT DIGNQQGSMY GRCSLSFKLM PKSMTNLNCT
301: EMRAAGHGVE AQFQLPVPVD DFMQRSTDQL LNRSNFPTFN FPTVQDGSMK PMMRRRKSNS RSKPLPPSKR LRLEAQRVLK ERVQDIADKK GIKLRFCTLK
401: DCESHIQSLD CPCTNIRMEI GWPPGVPFVH PHDLPNKAKI GFLETYEPGW SATHDMELSL IDPGQPSQHT SN

Best Arabidopsis Sequence Match ( AT3G12940.1 )
(BLAST)

001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN

Arabidopsis Description

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.