Factsheet for PGSC0003DMT400030432

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052220.2.1	Tomato	nucleus	82.51	83.69
CDX95798	Canola	extracellular	13.24	49.56
VIT_13s0067g03030.t01	Wine grape	nucleus	51.3	49.21
KRH64207	Soybean	nucleus	44.44	44.13
KRH53725	Soybean	nucleus	44.44	43.93
TraesCS5A01G469100.2	Wheat	nucleus	34.28	42.03
TraesCS5D01G481900.1	Wheat	nucleus	34.04	41.86
CDX98826	Canola	nucleus	35.93	41.64
Bra009097.1-P	Field mustard	nucleus	34.99	41.11
CDX70167	Canola	nucleus	34.99	41.11
AT5G05230.1	Thale cress	nucleus	34.99	40.77
TraesCS5B01G481600.1	Wheat	nucleus	32.86	40.76
EER90651	Sorghum	nucleus, plastid	32.62	40.59
Zm00001d034607_P001	Maize	plastid	31.68	38.73
PGSC0003DMT400048900	Potato	cytosol	7.57	38.55
HORVU5Hr1G111680.4	Barley	plastid	34.04	38.1
GSMUA_Achr1P17210_001	Banana	nucleus	35.22	36.08
Os03t0816000-01	Rice	plastid	13.95	27.96
PGSC0003DMT400082437	Potato	plastid	24.11	18.25
PGSC0003DMT400057242	Potato	nucleus	9.93	8.9

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	UniProt:M1AU90	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG402011656
PGSC:PGSC0003DMG402011656	EnsemblPlants:PGSC0003DMT400030432	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850
UniParc:UPI000294D45E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box domain-containing protein 62 [Source:PGSC_GENE;Acc:PGSC0003DMG402011656]

Coordinates

chr5:+:47464377..47473114

Molecular Weight (calculated)

46371.2 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.822

Length

423 amino acids

Sequence
(BLAST)

001: MGLVSARRVE NGLNPQLVFH ESSFSCGAPP PPQPPGRVGS VTGDPGPKTT RELTGFIDKY DNHQHHYFLN QHQPQAADFR RQMFGDNRGD GDWNRKSHGD
101: GDGDGDGSED DDMDEDEDDE DNDDENEVEG IVTVENSNHH QNNSSDKVNS NSSSKVVGSD KTKSVSTFGV KEGNVGPSGN EGGVDVRNAV TIASVDGDMY
201: YNQYLQGPEG SNAGQKEMGF ENGCGFSGRK EAHFSNESGE SLRTILSDPI TGELMDDAMI LPCGHSFGSG GVQHVIRMKV CYICSQAVSE DSVSPNLSLR
301: SAIQAFRREE ESQLNRSLKR RKERYDQDRG TFGDSALPDH LRGRGVQFPF AVTDRVIIKG NKRTPERFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR
401: SLAKVSDNLS IQPISSKTAA NWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.