CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034607_P001	Maize	plastid	80.29	78.9
TraesCS5B01G481600.1	Wheat	nucleus	53.24	53.08
TraesCS5D01G481900.1	Wheat	nucleus	52.94	52.33
TraesCS5A01G469100.2	Wheat	nucleus	51.18	50.43
HORVU5Hr1G111680.4	Barley	plastid	52.94	47.62
GSMUA_Achr1P17210_001	Banana	nucleus	43.53	35.84
Os03t0816000-01	Rice	plastid	21.18	34.12
PGSC0003DMT400030432	Potato	nucleus	40.59	32.62
KRH64207	Soybean	nucleus	40.29	32.16
Solyc05g052220.2.1	Tomato	nucleus	39.41	32.13
Bra000197.1-P	Field mustard	nucleus	31.76	31.58
KRH53725	Soybean	nucleus	39.71	31.54
VIT_13s0067g03030.t01	Wine grape	nucleus	40.88	31.52
AT2G40640.1	Thale cress	mitochondrion	32.35	28.72
CDY22467	Canola	mitochondrion	30.29	26.34
EES07813	Sorghum	plastid	30.88	21.17
CDY69157	Canola	extracellular, golgi, vacuole	9.41	10.7
OQU89978	Sorghum	cytosol, nucleus, peroxisome	10.0	7.19

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8057388	UniProt:C5WV61	ncoils:Coil	EnsemblPlants:EER90651
ProteinID:EER90651	ProteinID:EER90651.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	EnsemblPlantsGene:SORBI_3001G039600
SUPFAM:SSF57850	unigene:Sbi.16610	UniParc:UPI0001A82008	InterPro:Ubox_domain	RefSeq:XP_002463653.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:2951770..2955625

Molecular Weight (calculated)

36524.6 Da

IEP (calculated)

6.111

GRAVY (calculated)

-0.584

Length

340 amino acids

Sequence
(BLAST)

001: MASPAGANSG ASSSRGTPLP LPFPFPAAAH FPSRGAGPFL SQHHHPPVTS EGDDEVEEDE GSMDDDSAEE DDAELSDGGA RGSPQRRAFS APGIGRTEMN
101: GEIAVRSIQE GQQWHQFGLA SPGVDDPGTI PRDLRGENGY GIVGRREGGP ASSYWDLLRA HLSDPLTGIL MDDAMILSCG HSYGSSGMQH VYRMKACGKC
201: GLPITEASIR PNLALRLAVQ AFKREEDSAK SLKRRRDRLE LDKCGDDDPN RTDLASRGKG VQFPFAVFDR VIIKGNKRTP ERFVGRQAVV TAQCLNGWYV
301: VKTSDNAESV KLQYRSLAKV ADGNGPSGLV SSNTQSSSWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.