Factsheet for VIT_13s0067g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030432	Potato	nucleus	49.21	51.3
Solyc05g052220.2.1	Tomato	nucleus	47.85	50.6
KRH53725	Soybean	nucleus	47.17	48.6
KRH64207	Soybean	nucleus	46.71	48.36
CDX95798	Canola	extracellular	12.24	47.79
Bra009097.1-P	Field mustard	nucleus	35.37	43.33
CDX70167	Canola	nucleus	35.37	43.33
CDX98826	Canola	nucleus	35.6	43.01
TraesCS5A01G469100.2	Wheat	nucleus	33.56	42.9
TraesCS5D01G481900.1	Wheat	nucleus	33.33	42.73
AT5G05230.1	Thale cress	nucleus	35.15	42.7
TraesCS5B01G481600.1	Wheat	nucleus	31.75	41.06
EER90651	Sorghum	nucleus, plastid	31.52	40.88
Zm00001d034607_P001	Maize	plastid	31.52	40.17
HORVU5Hr1G111680.4	Barley	plastid	32.88	38.36
GSMUA_Achr1P17210_001	Banana	nucleus	34.47	36.8
Os03t0816000-01	Rice	plastid	12.7	26.54
VIT_01s0010g01230.t01	Wine grape	plastid	25.85	19.29
VIT_19s0027g00600.t01	Wine grape	cytosol	9.98	8.8

Protein Annotations

EntrezGene:100262140	wikigene:100262140	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM468072	ProteinID:CAN61689
ProteinID:CAN61689.1	ProteinID:CCB49785	ProteinID:CCB49785.1	UniProt:F6HC73	EMBL:FN595514	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	EntrezGene:LOC100262140
wikigene:LOC100262140	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850	UniParc:UPI00019848CA
InterPro:Ubox_domain	ArrayExpress:VIT_13s0067g03030	EnsemblPlantsGene:VIT_13s0067g03030	EnsemblPlants:VIT_13s0067g03030.t01	RefSeq:XP_002275253	RefSeq:XP_002275253.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:1617532..1622420

Molecular Weight (calculated)

48373.9 Da

IEP (calculated)

4.782

GRAVY (calculated)

-0.810

Length

441 amino acids

Sequence
(BLAST)

001: MASEEVGFVP PQRLENGLNS QLVFQDEALR FNCGAPQRRV GDPGPKTREL SSFIDEKMFC VERDRYFHPQ GGEFRRSIYG DAPPERPDGR NWNGNGNTPT
101: PSGEGSEGEE DDDEEEEDDD DEVDEGDGEV EGLVAVDDAN KSNNHSSGSL HSSADKIGNG KAKDHSSFGS NRDVLMKDGA IVLSTNSARA SPSENHRQGR
201: ISHYQNAVTI AEPDGDMYYS QFLQGPEGSA PGQKELAVEN GCGFSGRKDV SLSTESGESL KAILSDPLTG ALMDDAMILP CGHSFGGGGM QHVIKMKACS
301: TCSQPFSEDS VQPNLSLRAA VQAFRREEEL QVYRTSKRRR ERSDQDKCSY GDSTLMDTPR GRGVQFPFAV TDRVIIKGNK RTPQRFVGRE AVVTTQCLNG
401: WYVVKTLDNA ESVKLQYRSL AKVPDNPSSK PMLSKMTPNW L

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.