CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70167	Canola	nucleus	85.21	86.39
AT5G05230.1	Thale cress	nucleus	76.16	76.58
CDX95798	Canola	extracellular	23.01	74.34
KRH64207	Soybean	nucleus	44.66	38.26
KRH53725	Soybean	nucleus	43.56	37.15
PGSC0003DMT400030432	Potato	nucleus	41.64	35.93
VIT_13s0067g03030.t01	Wine grape	nucleus	43.01	35.6
Solyc05g052220.2.1	Tomato	nucleus	40.55	35.49
CDY22467	Canola	mitochondrion	33.97	31.71
CDY42216	Canola	cytosol, mitochondrion, plastid	24.93	18.2
CDY33428	Canola	plastid	25.21	16.73
CDY69157	Canola	extracellular, golgi, vacuole	13.15	16.05
CDY23555	Canola	nucleus	10.68	8.39
CDY60118	Canola	nucleus	10.41	8.19

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078ECC7	EnsemblPlants:CDX98826	ProteinID:CDX98826	ProteinID:CDX98826.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00106925001	InterPro:IPR003613
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850
UniPathway:UPA00143	UniParc:UPI0004EE4448	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaC09g50090D

Coordinates

chrLK031907:+:180947..183018

Molecular Weight (calculated)

39649.5 Da

IEP (calculated)

4.594

GRAVY (calculated)

-0.690

Length

365 amino acids

Sequence
(BLAST)

001: MSGKGLSPAS FSAPPMTVQD ADPLRFRVGE QDPKTREFAA FIGDQHRYFA AAAAAAAAAN PHPQPHIEFR QSFYSESGNP NDSGGSDGEE VVEEEEEEEE
101: EDDDDVDGNE GDGMNKDVGE DGGGAVVGIE QDNAAYYSQQ FKAMEASFVS RQEESSSVAA ENGCDVSGRR DASSSSLSNS VESLRTILSD PITGALMSDA
201: MILPCGHTFG AGGIEQVKQM KACCTCSQPV SEDSITPNLT LRVAVQAFCR EEKSQSNHSS KRKREGFDQE RRSFGDTAYT NRSRNRTNHF PFAVADRVII
301: KGNKRTPPRF VGREAVVTTQ CLNGWYVVKT LDNAESVKLQ YRSLAKATED PSTKATPSKM VPNWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.